Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 8e-16
>seq2
Length=170201513
Score = 98.7 bits (108), Expect = 8e-16
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | |||||| ||||| || ||||| ||||||||||| | | ||| | | ||
Sbjct 31611803 AGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611744
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || ||||| ||| | || | || ||| ||||| ||| | || ||||||||
Sbjct 31611743 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611684
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| |||||| || || | | | ||||| | ||||| |||| ||||||||
Sbjct 31611683 TGGATCTTTGCT--TTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGG 31611626
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
| || || ||||| ||||| ||||| |||||||||
Sbjct 31611625 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | |||||| ||||| || || || ||||||||||| | | ||| | | ||
Sbjct 31611347 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611288
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || ||||| ||| | || | || ||| ||||| ||| | || ||||||||
Sbjct 31611287 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611228
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| |||||| || || | | | ||||| | ||||| |||| ||||||||
Sbjct 31611227 TGGATCTTTGCT--TTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGG 31611170
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
| || || ||||| ||||| ||||| |||||||||
Sbjct 31611169 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405054319717780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |