Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq173 131 1e-25 seq1 129 4e-25 seq2 93.3 3e-14 >seq173 Length=227986 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 72463 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 72522 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 72523 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 72557 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 88068 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 88127 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 88128 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 88162 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 90694 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCCGCTATCGGTCTCGT 90753 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 90754 GCCGGTATTTAGCCTTA 90770 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 223189 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCCGCTATCGGTCTCGT 223248 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 223249 GCCGGTATTTAGCCTTA 223265 Score = 100 bits (110), Expect = 2e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 76063 CTCTCTCTTCAAAGTTCTTTTCA-CTTTCCCTTACGGTACTTGTCCGCTATCGGTCTCGT 76121 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 76122 GCCGGTATTTAGCCTTA 76138 >seq1 Length=194866763 Score = 129 bits (142), Expect = 4e-25 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||||||| | |||||||| |||||| |||||||| || || || || || Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGAT 151539021 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||||| || ||||| || | | ||||||||| | || Sbjct 151539020 AAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGA 151538961 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCA 38267 | ||||||||| ||| ||||| ||||||||| | | ||| || |||| ||| Sbjct 151538960 ATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTC---ACTTGGCTCA 151538904 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||||| ||| || || || || || | |||||||| |||||||||||||| Sbjct 151538903 ACTTCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATGTT 151538851 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | ||||| || || ||| || || ||||| ||||||||||| Sbjct 151539536 CCACCTCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539477 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || ||||||||||| || | | || || |||| || Sbjct 151539476 AGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGA 151539417 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||||||| || ||||| | | || || | |||||| Sbjct 151539416 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACC 151539357 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || |||||||| |||| ||| ||||| ||||| ||||| Sbjct 151539356 TCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | || || || | ||| || |||||||| ||||| ||||| Sbjct 151539308 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 151539249 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || | | || || || | ||| Sbjct 151539248 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 151539189 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCA 38267 | |||||| ||||| |||||| ||| ||||||| | |||||| |||| ||| Sbjct 151539188 ATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTATC---ACTTGGCTCA 151539132 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| || || || |||| ||| ||||| ||||||||||| Sbjct 151539131 ACCTCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 >seq2 Length=170201513 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| ||| | || | ||| || ||| || || || ||||| || | Sbjct 31610910 CATT-CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGT 31610852 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | || | || || | || || |||||||| || | | || || || | Sbjct 31610851 CAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTG 31610792 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT- 38264 ||||| ||||||||||| || ||| || ||||||| | || | ||||| Sbjct 31610791 GGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGT---CACTTG 31610735 Query 38265 --TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 31610734 GCTCAACTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 31610680 Score = 86.0 bits (94), Expect = 4e-12 Identities = 168/243 (69%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| |||| ||| | || | ||| ||||| ||| ||||| |||||||||| Sbjct 31802704 CATT-CCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAAT 31802646 Query 38146 CAGACAAAAC-ACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| ||| || ||| || || | || || |||||||| || | | || || || Sbjct 31802645 CAG-CAAGACTACGGCAATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCT 31802587 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | ||||| ||||||||||| || ||| || ||||||| | || | ||||| Sbjct 31802586 GGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGT---CACTT 31802530 Query 38265 ---TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || || | || || || || || |||| |||||| || || ||||||||| || Sbjct 31802529 GGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATGATT 31802470 Query 38322 TAC 38324 || Sbjct 31802469 GAC 31802467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334919351443082