Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq106 116 5e-21 seq6 105 8e-18 >seq106 Length=555726 Score = 116 bits (128), Expect = 5e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 63812 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 ||||||| ||| || ||||| ||||| | || || |||||||| | || || |||||| Sbjct 336128 CTAAATATTTTCTTGGTTTCCTTGTGCAAGTTAGAGACGGCTATCCGGGCAGCCAGAATG 336069 Query 63872 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 63931 |||||||| || || | ||| || ||||||||| | || ||||| | ||||||| | Sbjct 336068 GCATAATCTGGGTGCTTTGTGGTCAGGGTGGCTGCTGTCTCCGCTGCTAATGTGTCCAGT 336009 Query 63932 TCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTT 63983 |||| ||||| || |||||||| | || || || || ||||||| |||| Sbjct 336008 TCTATAGTTGTGACCCCATTATAAAGCCCCTGAATGACTTTCATAGTGATTT 335957 Score = 100 bits (110), Expect = 4e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63129 || ||||||||||||||||| || ||||| | || ||| || ||||| |||| ||| || Sbjct 345971 ACACGTTTCATAAAGAGATCTGGTATCCACATGGC-ATAGAACAGATCCCTGGCTCTCTG 345913 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| ||||| || |||||||| || || ||||| | | | ||| | |||||||| Sbjct 345912 CTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAATTCAAAGACATCGTAGTGCCACGG 345853 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCC 63218 |||| ||| ||||| | | ||||||| Sbjct 345852 CTCCAGGTAAATGGCAAATGCACCAGGCC 345824 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 62190 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62249 |||| || || || ||||||| ||||| || ||||| ||||| |||||||| || || | Sbjct 351716 CTACCTGGAACTCGCCAGACAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAA 351657 Query 62250 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62309 ||||||||||| |||| ||||| ||||| || || || ||||| || |||| | | Sbjct 351656 TGGACTCATTATTGCCCAGGATTTGTGCAGTGGAAGCCGTGGGCATTGGAGCCAGAAGCA 351597 Query 62310 AACTATTTCTAAGACCGTAT 62329 |||| || | | |||||| Sbjct 351596 AACTGTTCCGGACGCCGTAT 351577 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | || ||||||||||| || |||||||||||||| | |||||| Sbjct 338670 GTACCAGCATTGAACAGTGTGGGAGAAGCGTGCGTGAACCATTTTTCAGACAACAGATTG 338611 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || || ||||| | ||| || || || ||| || || || | || | ||| | | Sbjct 338610 TAGGTTTCGATAGCGGCGTCAATGTCTGTTTTATGTATGCCAACGGATACCCTCATCAGC 338551 Query 63587 ATGTGCTGAGG 63597 |||||||| || Sbjct 338550 ATGTGCTGTGG 338540 >seq6 Length=135134832 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | || ||||| || |||||||| ||||| || || | || | Sbjct 118784199 CCTCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCT 118784140 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || | ||||| |||||||| ||||| |||||||||||||| || || | Sbjct 118784139 TTAGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATG 118784080 Query 32803 CAATAAGTCTCTCTCC 32818 | | | ||||||||| Sbjct 118784079 CCACCACTCTCTCTCC 118784064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633577967031200