Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq2 127 2e-24 >seq1 Length=194866763 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| |||| || || |||| || | || || ||| | | Sbjct 151539082 ATGCAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGAGCCAAGT 151539141 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| ||| | ||| ||||||| ||||| ||||| ||||| |||||||| Sbjct 151539142 GATACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAG 151539201 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | |||||||| ||||| || | ||||||| ||||||| | || ||||| Sbjct 151539202 CAGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 151539261 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| | || ||||| || | || ||||| || Sbjct 151539262 ATTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGG 151539308 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| |||| |||||| | || || | || || || | | Sbjct 151539310 ATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGT 151539369 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || ||||||||| ||| ||||||||||| ||||| || ||| Sbjct 151539370 GACACCATTGA--AAATGTAAAAGCAAAAATTCA-AGACAAAGAAGGTATTCCTCCCGAC 151539426 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || |||||||| || || | ||||||| ||||| | |||||| Sbjct 151539427 CAGCAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTAC 151539486 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||||||||| || || || || || | || ||||| || Sbjct 151539487 AACATTCAGAAAGAATCCACACTGCACTTGGTTCTTCGTCTCAGAGGTGG 151539536 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||| || | ||||| ||| | | Sbjct 151539538 ATGCAGATTTTTGTCAAGACCCTGACTGGGAAGACCATTACTCTTGAAGTTGAGCCCAGT 151539597 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||||||| || || ||||| ||||| |||||||| Sbjct 151539598 GACACAATTGAGAATGTAAAGGCAAAAATCCAAGATAAGGAAGGCATTCCCCCTGACCAG 151539657 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| |||||| | |||||||| Sbjct 151539658 CAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTACAAC 151539717 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||||||||| || || Sbjct 151539718 ATTCAGAAAGAATCCACCCTGCA 151539740 >seq2 Length=170201513 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || |||| || || ||||||| | || || ||| | Sbjct 31802929 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31802988 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | || ||| ||| ||||||||||| || || || ||||| Sbjct 31802989 TGACACCATAGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31803048 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| ||| ||||||||| ||||| | | || ||||| Sbjct 31803049 GCAGAGGTTGATCTTTGCCGGCAAGCAACTAGAAGATGGCCGCACCCTTTGTGACTACAA 31803108 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || || |||||||| || ||| | || || | || ||||| |||| Sbjct 31803109 TATCCAGAAGGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31803158 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || |||| || || ||||||| | || || ||| | Sbjct 31610907 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31610966 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | || ||||||| | || ||||||||||| || || || || Sbjct 31610967 TGACACAATAGAG--AATGTCAAAGCAAAGATCCAA-GACAAAGAAGGTATCCCTCCAGA 31611023 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||||||||| || | ||||||| |||||| | || || Sbjct 31611024 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACACTTTCTGACTA 31611083 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || ||||||||||| || ||| | || || | || ||||| |||| Sbjct 31611084 TAATATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31611136 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || |||| || || ||||||| | || || ||| | Sbjct 31611591 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGAGCCAAG 31611650 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | || ||||||| | || ||||||||||| || || || || Sbjct 31611651 TGACACAATAGAG--AATGTCAAAGCAAAGATCCAA-GACAAAGAAGGTATCCCTCCAGA 31611707 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||||||||| || | ||||||| ||||| | || || Sbjct 31611708 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTA 31611767 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || |||||||||||||| || ||| | || || | || ||||| || Sbjct 31611768 CAACATCCAAAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31611818 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || |||| || ||| |||| || | ||||| ||| | Sbjct 31610679 AATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTTGAGCCAAG 31610738 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | || ||||||| | || ||||||||||| || || || || Sbjct 31610739 TGACACAATAGAG--AATGTCAAAGCAAAGATCCAA-GACAAAGAAGGTATCCCCCCAGA 31610795 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||||||||| || | ||||||| ||||| | || || Sbjct 31610796 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTA 31610855 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || ||||||||||| || ||| | || || | || ||||| |||| Sbjct 31610856 TAATATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31610908 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || |||| || || ||||||| | || || ||| | Sbjct 31611135 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611194 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | || ||||||| | || ||||||||||| || || || || Sbjct 31611195 TGACACAATAGAG--AATGTCAAAGCAAAGATCCAA-GACAAAGAAGGTATCCCTCCAGA 31611251 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||||||||| || | ||||||| ||||| | || || Sbjct 31611252 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTA 31611311 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || || ||||||||||| || ||| | || || | || ||||| |||| Sbjct 31611312 CAACATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31611364 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || |||| || || ||||||| | || || ||| | Sbjct 31611363 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611422 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | || ||||||| | || ||||||||||| || || || || Sbjct 31611423 TGACACAATAGAG--AATGTCAAAGCAAAGATCCAA-GACAAAGAAGGTATCCCTCCAGA 31611479 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||||||||| || | ||||||| ||||| | || || Sbjct 31611480 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTA 31611539 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || ||||||||||| || ||| | || || | || ||||| |||| Sbjct 31611540 TAATATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31611592 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || |||| || || ||||||| | || || ||| | | Sbjct 31802474 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31802533 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || ||||||| | || ||||||||||| || || || ||| Sbjct 31802534 GACACAATAGAG--AATGTCAAAGCAAAGATCCAA-GACAAAGAAGGTATCCCCCCAGAC 31802590 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||||||||| || | |||||| || | | | | |||||| Sbjct 31802591 CAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATTGCCGTAGTCTTGCTGATTAC 31802650 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| |||||||| || || || ||| | || || | || || || |||| Sbjct 31802651 AATATACAAAAAGAGTCAACTCTGCATCTTGTCCTTCGTCTGAGGGGTGGAA 31802702 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || |||| || || |||| || | || || ||| | Sbjct 31802701 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGAGCCAAG 31802760 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | || ||| ||| ||||||||||| || || || ||||| Sbjct 31802761 TGACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31802820 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| ||||| | | || ||||| Sbjct 31802821 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAA 31802880 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||||||||| || ||| | || || | || ||||| |||| Sbjct 31802881 CATCCAGAAAGAATCCACCCTGCATCTTGTACTTCGTCTGAGAGGTGGAA 31802930 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || |||| || || ||||||| | || || ||| | Sbjct 31803157 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31803216 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | || ||| ||| ||||||||||| || || || ||||| Sbjct 31803217 TGACACCATTGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCA 31803276 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| ||||| | | || || || Sbjct 31803277 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTATAA 31803336 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || |||||||| || || ||| | || || | || ||||| || Sbjct 31803337 TATCCAGAAAGAATCAACTCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31803384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433291971755930