Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 seq2 107 2e-18 >seq1 Length=194866763 Score = 141 bits (156), Expect = 8e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || || | || |||||||| | || ||||| || ||| | | Sbjct 151539309 GATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAG 151539368 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | ||| ||||||||||||||| || |||||||| ||||| || Sbjct 151539369 TGACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCA 151539428 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| || ||| | || ||| |||||| |||| |||||||| Sbjct 151539429 GCAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAA 151539488 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| ||||||||||| | || || ||| Sbjct 151539489 CATTCAGAAAGAATCCACACTGCACTTGGTT 151539519 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || || | || || || || | ||||||||||| || ||| Sbjct 151539537 GATGCAGATTTTTGTCAAGACCCTGACTGGGAAGACCATTACTCTTGAAGTTGAGCCCAG 151539596 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | || |||||| ||||| ||||| || ||||| || || || Sbjct 151539597 TGACACAATTGAGAATGTAAAGGCAAAAATCCAAGATAAGGAAGGCATTCCCCCTGACCA 151539656 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| ||||| ||| | || ||| |||||| |||| |||||||| Sbjct 151539657 GCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTACAA 151539716 Query 22398 CATTCAAAAAGAATCCACC 22416 |||||| |||||||||||| Sbjct 151539717 CATTCAGAAAGAATCCACC 151539735 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || | || ||||| || || | | Sbjct 151539081 GATGCAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGAGCCAAG 151539140 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | || |||||| ||||||||||| || ||||| || || || Sbjct 151539141 TGATACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCA 151539200 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| ||||| ||| | || ||| ||||| | || || ||||| Sbjct 151539201 GCAGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 151539260 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||||||||||||||||| | || |||||| Sbjct 151539261 CATTCAAAAAGAATCCACCTTGCACTTAGTT 151539291 >seq2 Length=170201513 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| || || || || | | Sbjct 31611136 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31611195 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||| || |||||||| || ||||| || || || || Sbjct 31611196 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611255 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| ||| | || ||| ||||||| | || || |||||| Sbjct 31611256 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 31611315 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || |||||||||||| | ||| Sbjct 31611316 ATCCAGAAAGAATCCACCCTGCAT 31611339 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| | || || || | | Sbjct 31611592 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGAGCCAAGT 31611651 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||| || |||||||| || ||||| || || || || Sbjct 31611652 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611711 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| ||| | || ||| ||||||| | || || |||||| Sbjct 31611712 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 31611771 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || ||||||||||||||| | ||| Sbjct 31611772 ATCCAAAAAGAATCCACCCTGCAT 31611795 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || ||||| | || | ||||| || | | Sbjct 31610680 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTTGAGCCAAGT 31610739 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||| || |||||||| || ||||| || || || || Sbjct 31610740 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31610799 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| ||| | || ||| ||||||| | || || || || Sbjct 31610800 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTATAAT 31610859 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || |||||||||||| | ||| Sbjct 31610860 ATCCAGAAAGAATCCACCCTGCAT 31610883 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || | ||||| || || || | | Sbjct 31802702 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGAGCCAAGT 31802761 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||| || |||||||| || ||||| || || || || Sbjct 31802762 GACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31802821 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| ||||| ||| | || ||| ||||||| | | || |||||| Sbjct 31802822 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAAC 31802881 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || |||||||||||| | ||| Sbjct 31802882 ATCCAGAAAGAATCCACCCTGCAT 31802905 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| || || || || | | Sbjct 31611364 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31611423 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||| || |||||||| || ||||| || || || || Sbjct 31611424 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611483 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| ||| | || ||| |||||| | || || || || Sbjct 31611484 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTATAAT 31611543 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || |||||||||||| | ||| Sbjct 31611544 ATCCAGAAAGAATCCACCCTGCAT 31611567 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| || || || || | | Sbjct 31802930 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31802989 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| ||| || |||||||| || ||||| || || || || Sbjct 31802990 GACACCATAGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31803049 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| || |||| ||| ||||||| | | || ||||| Sbjct 31803050 CAGAGGTTGATCTTTGCCGGCAAGCAACTAGAAGATGGCCGCACCCTTTGTGACTACAAT 31803109 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || ||||||||| | ||| Sbjct 31803110 ATCCAGAAGGAATCCACCCTGCAT 31803133 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| || || || || | | Sbjct 31610908 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31610967 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||| || |||||||| || ||||| || || || || Sbjct 31610968 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611027 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| ||| | || ||| ||||| | || || || || Sbjct 31611028 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACACTTTCTGACTATAAT 31611087 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || |||||||||||| | ||| Sbjct 31611088 ATCCAGAAAGAATCCACCCTGCAT 31611111 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| || || || || | | Sbjct 31803158 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31803217 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| ||| || |||||||| || ||||| || || || || Sbjct 31803218 GACACCATTGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31803277 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| ||| | || ||| ||||||| | | || || || Sbjct 31803278 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTATAAT 31803337 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 31803338 ATCCAGAAAGAATCAAC 31803354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| || || || || | | Sbjct 31802474 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31802533 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||| || |||||||| || ||||| || || || || Sbjct 31802534 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31802593 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCT--CCGATTACA 22396 || | | || ||||||||||| ||| | || ||| ||| | |||| | ||||||| Sbjct 31802594 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATTGCCGTA--GTCTTGCTGATTACA 31802651 Query 22397 ACATTCAAAAAGAATCCAC 22415 | || |||||||| || || Sbjct 31802652 ATATACAAAAAGAGTCAAC 31802670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419693102502430