Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 seq2 158 2e-33 >seq1 Length=194866763 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| ||||| || ||||| ||||| |||||||| | |||||||| Sbjct 151539518 ACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTCC 151539459 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || | ||| || |||||||| ||||| ||||| ||||||||| Sbjct 151539458 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCTTGA 151539399 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||||| || || || |||||||| || ||| || || | ||| || ||||| Sbjct 151539398 ATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTTA 151539339 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| || ||||| ||||| Sbjct 151539338 CCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| | ||||| |||||||| ||||| || || || || || | |||||||| Sbjct 151539290 ACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 151539231 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || | ||| || ||||| || |||||||||||||||||||| Sbjct 151539230 AGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGG 151539171 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || |||||||| || ||| || || || || || || || | ||| ||||| || Sbjct 151539170 ATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTTC 151539111 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| || ||||||||||| Sbjct 151539110 CCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||| ||||| || ||||| ||||| ||||| || | |||||||| Sbjct 151539746 ACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCC 151539687 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || | || || ||||| || |||||||||||||| ||||| Sbjct 151539686 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGG 151539627 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || |||||||| || ||| || ||||| | || ||||| | || ||||| || Sbjct 151539626 ATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTC 151539567 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||||||||| || |||||||| Sbjct 151539566 CCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||| || |||||||||||||| || || | || | |||||||| Sbjct 151539062 ACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCC 151539003 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || | |||||||| || || ||||||||||| || || || Sbjct 151539002 AGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGT 151538943 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || ||||| || || || ||||| || || ||||| | |||||||| || Sbjct 151538942 ATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTC 151538883 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || || ||||||||||| Sbjct 151538882 CCAGTGAGCGTTTTCACAAATATCTGCAT 151538854 >seq2 Length=170201513 Score = 158 bits (174), Expect = 2e-33 Identities = 161/209 (77%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| |||||||||||||| || || || || || | |||||||| | Sbjct 31611799 CAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCA 31611740 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || | || || ||||| || || || ||||| |||||||| | Sbjct 31611739 GCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGA 31611680 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 ||||||| ||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct 31611679 TCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGC 31611620 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| || || || ||||||||| Sbjct 31611619 CAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||| ||||| ||||| || || || || | |||||||| | Sbjct 31610887 CAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCTTCCA 31610828 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || | || || ||||| || || || ||||| |||||||| | Sbjct 31610827 GCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGA 31610768 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 ||||||| ||||| ||| || ||||| || || ||||||||||| |||||||| | Sbjct 31610767 TCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTTTTGC 31610708 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || ||||| || || || ||||||||| || Sbjct 31610707 CAGTCAGGGTTTTCACAAAGATCTGCATTCTG 31610676 Score = 134 bits (148), Expect = 3e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || ||||||||||| || || ||||| | || | | | |||||| | Sbjct 31802681 CAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCAA 31802622 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || | || || ||||| || || || ||||| |||||||| | Sbjct 31802621 GCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGA 31802562 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 ||||||| ||||| ||| || ||||| || ||||| |||| ||||||||| || | Sbjct 31802561 TCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGC 31802502 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 | || ||||| || || || |||||||| || Sbjct 31802501 CAGTCAGGGTTTTTACAAAGATCTGCATGAT 31802471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921543808649840