Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq2 105 6e-18 >seq1 Length=194866763 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || |||||||| |||||||||||||| | || || |||||| Sbjct 151539519 AACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTC 151539460 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || || |||| | | ||| ||||| |||||||| ||||||||||| Sbjct 151539459 CAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCTTG 151539400 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| ||| ||||| | ||||| |||||| | | ||| || || | ||| | ||||| Sbjct 151539399 AATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTT 151539340 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || || ||||| || ||||| Sbjct 151539339 ACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 |||||| || | || |||||||||||||||||||| || | ||| ||| |||||| Sbjct 151539291 AACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTC 151539232 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || ||||| | || | | ||| ||||| || ||||||||||| ||||| Sbjct 151539231 CAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTG 151539172 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| |||| | |||| || || | | || || || | ||| | || || Sbjct 151539171 GATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTT 151539112 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || || ||||| |||||||| Sbjct 151539111 CCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| |||||||||||||| | ||| || |||||| || || || || Sbjct 151539734 GTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 151539675 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||| || || || ||| ||| Sbjct 151539674 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTTGCCTTT 151539615 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| ||| || || || | || | || || || ||||| || Sbjct 151539614 ACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTCCCAGTCAGGGTC 151539555 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 151539554 TTGACAAAAATCTGCAT 151539538 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA--GTACGAGAATCT 114230 ||| ||||| | || ||||| ||||| ||||| || || | ||| || || |||| Sbjct 151539063 AACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTC--TGATAAGGTTCGGCCATCT 151539006 Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCG 114290 || || ||||| ||||| |||| | | ||||| || ||||||||||||||||| || Sbjct 151539005 TCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCC 151538946 Query 114291 GCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 || || || | | ||||| ||||| | | || || || | || | || Sbjct 151538945 TGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTC 151538886 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || || || ||||| ||||| ||||||||| Sbjct 151538885 TTCCCAGTGAGCGTTTTCACAAATATCTGCATG 151538853 >seq2 Length=170201513 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || |||||||| || |||||||| | | |||| |||||||||| || || || Sbjct 31802670 GTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCAAGCTGCTTGCCG 31802611 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || || || ||||||||||| |||||| ||| Sbjct 31802610 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31802551 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | || || |||| ||| | || ||||| ||||| ||| Sbjct 31802550 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31802491 Query 114366 TTTACAAAAATCTGCATG 114383 |||||||| ||||||||| Sbjct 31802490 TTTACAAAGATCTGCATG 31802473 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||| |||||||| || | || || |||||| || || || || Sbjct 31611788 GTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31611729 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 31611728 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31611669 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | || || |||| ||| | || ||||| ||||| ||| Sbjct 31611668 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 31611609 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 31611608 TTTACAAAGATCTGCAT 31611592 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || | | || || |||||| || || || ||| Sbjct 31802898 GTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 31802839 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 31802838 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTCCTTTG 31802779 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | || || |||| || | || ||||| ||||| ||| Sbjct 31802778 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTT 31802719 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 31802718 TTTACAAAGATCTGCAT 31802702 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || || ||||| || | | || || |||||| ||||| || || Sbjct 31803126 GTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGGCCATCTTCTAGTTGCTTGCCG 31803067 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 31803066 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGATTTA 31803007 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | || || |||| ||| | || ||||| ||||| ||| Sbjct 31803006 ACATTCTCTATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31802947 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 31802946 TTTACAAAGATCTGCAT 31802930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || | || || |||||| || || || || Sbjct 31611332 GTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31611273 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 31611272 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31611213 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | || || |||| ||| | || ||||| ||||| ||| Sbjct 31611212 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31611153 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 31611152 TTTACAAAGATCTGCAT 31611136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || || || || || | | || || |||||| || || || || Sbjct 31803354 GTTGATTCTTTCTGGATATTATAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31803295 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || || || ||||||||||| |||||| ||| Sbjct 31803294 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGATTTA 31803235 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || |||| ||| | || ||||| ||||| ||| Sbjct 31803234 ACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31803175 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 31803174 TTTACAAAGATCTGCAT 31803158 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || || || || || | || ||| |||||| || || || || Sbjct 31611104 GTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATCTTCCAGCTGCTTGCCG 31611045 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 31611044 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31610985 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | || || |||| ||| | || ||||| ||||| ||| Sbjct 31610984 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31610925 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 31610924 TTTACAAAGATCTGCAT 31610908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || || || || || | || || |||||| || || || || Sbjct 31611560 GTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGCTTGCCG 31611501 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 31611500 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31611441 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | || || |||| ||| | || ||||| ||||| ||| Sbjct 31611440 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31611381 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 31611380 TTTACAAAGATCTGCAT 31611364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420099468713064