Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq106 114 2e-20 >seq106 Length=555726 Score = 114 bits (126), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| || ||||| ||||| |||||||||||||| ||||||||||||| ||| | Sbjct 346853 TGGTGTACTCCACGATCTCTGTGCACAGGTTACTGCACTTAATGGTGCCCAGGTTCTGCT 346794 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 ||||| |||| ||| ||||| |||||||| |||||| |||| Sbjct 346793 GATTGCTCTTGCGGTTACAGGCATCCTTGTACAGCATGTAGGG 346751 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||| ||||| || || ||||| | ||| | ||| || ||||||| |||||||| ||| Sbjct 345963 CATAAAGAGATCTGGTATCCACATGGCATAGAACAGATCCCTGGCTCTCTGCTCCTCCTT 345904 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||||||||||| | || |||| || |||||||| ||| |||||| ||||||| ||| Sbjct 345903 TCCAGTGTTCTTTTTTAGGTCCAGGAATTCAAAGACATCGTAGTGCCACGGCTCCAGGTA 345844 Query 245131 GACAGCGAGGGCGCCGGGCCGCT 245153 | || | || || |||| || Sbjct 345843 AATGGCAAATGCACCAGGCCTCT 345821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944258671474720