Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3419 91.5 1e-13 seq173 91.5 1e-13 seq7 87.8 1e-12 >seq3419 Length=4703 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 1347 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 1406 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 1407 CCATAACTGATTTAATGAGCCATTCG 1432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 1347 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 1406 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 1407 CCATAACTGATTTAATGAGCCATTCG 1432 >seq173 Length=227986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 79096 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 79155 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 79156 CCATAACTGATTTAATGAGCCATTCG 79181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 79096 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 79155 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 79156 CCATAACTGATTTAATGAGCCATTCG 79181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 93717 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 93776 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 93777 CCATAACTGATTTAATGAGCCATTCG 93802 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 93717 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 93776 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 93777 CCATAACTGATTTAATGAGCCATTCG 93802 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 227157 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 227216 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 227217 CCATAACTGATTTAATGAGCCATTCG 227242 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 227157 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 227216 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 227217 CCATAACTGATTTAATGAGCCATTCG 227242 >seq7 Length=117177943 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATTG-CTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| ||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 87989247 CATGTATTAACTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 87989306 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 87989307 CCATAACTGATTTAATGAGCCATTCG 87989332 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATTG-CTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| ||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 87989247 CATGTATTAACTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 87989306 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 87989307 CCATAACTGATTTAATGAGCCATTCG 87989332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397029386991244