Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 131 4e-25 seq1 127 5e-24 seq5 89.7 1e-12 >seq2 Length=170201513 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | ||| || ||||| | ||| |||||| |||||||||||||| | Sbjct 31611135 TCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGA 31611076 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || ||||| || ||||| | || || || || ||||||| | ||| || ||| Sbjct 31611075 AAGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTG---GTCTGG 31611019 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| |||||||| || ||||| || ||||| || || ||||| | || || | || Sbjct 31611018 AGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTC 31610959 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || ||||| ||||| || ||||| || || || || ||||||||| Sbjct 31610958 TACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31610907 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | ||| || ||||| | ||| |||||| |||||||||||||| | Sbjct 31611591 TCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGA 31611532 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || ||||| || ||||| | || || || || ||||||| | ||| || ||| Sbjct 31611531 AAGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTG---GTCTGG 31611475 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| |||||||| || ||||| || ||||| || || ||||| | || || | || Sbjct 31611474 AGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTC 31611415 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || ||||| ||||| || ||||| || || || || ||||||||| Sbjct 31611414 TACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611363 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | ||| |||||||||||| || ||||| | Sbjct 31611818 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 31611759 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||| | || || || || ||||||| | ||| || ||| Sbjct 31611758 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTG---GTCTGGA 31611702 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| |||||||| || ||||| || ||||| || || ||||| | || || | ||| Sbjct 31611701 GGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCT 31611642 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||| || ||||| || || || || ||||||||| Sbjct 31611641 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 118 bits (130), Expect = 3e-21 Identities = 168/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | ||| || ||||| | ||| |||||| |||||||||||||| | Sbjct 31610907 TCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGA 31610848 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || ||||| || ||||| | || || || || ||||||| | ||| || ||| Sbjct 31610847 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTG---GTCTGG 31610791 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| |||||||| || ||||| || ||||| || || ||||| | || || | || Sbjct 31610790 GGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTC 31610731 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| | || || || || || ||||| || || || || ||||||||| || Sbjct 31610730 AACTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTCTG 31610676 Score = 111 bits (122), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | || |||||| |||||||||||||| Sbjct 31803384 CCACCTCTCAGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAA 31803325 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||| | || || || || ||||||| | ||| || ||| Sbjct 31803324 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTG---GTCTGGG 31803268 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| |||||||| || ||||| || | ||| || || || || | || || | ||| Sbjct 31803267 GGGATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCT 31803208 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| || ||||| || || || || ||||||||| Sbjct 31803207 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31803157 >seq1 Length=194866763 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| |||||||| | | || || || ||||| | ||||| || || || Sbjct 151539045 TTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAA 151538986 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | |||||| ||||| || |||||||||||||| ||||| || ||||| Sbjct 151538985 GATCAACCTTTGTTGA---TCTGGAGGAATGCCTTCTTTATCCTGTATTTTAGCCTTCAC 151538929 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| |||| || || | || ||||| || ||||| |||||||| || || || || Sbjct 151538928 ATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAGTGAGCGTTTT 151538869 Query 288459 GACGAATATCTGCAT 288473 || ||||||||||| Sbjct 151538868 CACAAATATCTGCAT 151538854 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | ||| || | || | ||| ||||||||| || || ||||| | Sbjct 151539308 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 151539249 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || || |||| | ||| || | || Sbjct 151539248 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 151539189 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || |||||||| || || || || || |||| ||| || | || || Sbjct 151539188 ATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACC 151539129 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||||||| ||||| ||||| || ||||||||||| Sbjct 151539128 TCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 >seq5 Length=146437384 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/90 (84%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 194922 CCAGGATGGCCGAGTTGGTTAAGGCGATCGCCTCAAGAGCGATTGGATGTTATGTCCGCG 194981 ||||||||||||||| |||||||||| | | || |||| | | ||||||| ||||||||| Sbjct 55476431 CCAGGATGGCCGAGT-GGTTAAGGCGTTGGACTTAAGATCCAATGGATGT-ATGTCCGCG 55476488 Query 194982 TAGGTTCGAGCCCTACTTCTGGCA-CTGTT 195010 | ||||||||||| ||| |||| | ||||| Sbjct 55476489 TGGGTTCGAGCCCCACTCCTGGTAGCTGTT 55476518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179551290095316