Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 seq2 150 2e-31 >seq1 Length=194866763 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| | ||| || || || | || |||||||| |||||||||||||| | | Sbjct 151539764 CCACCCCTCAAACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539705 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| ||||||||||| ||| | || | || ||||||||| || ||| Sbjct 151539704 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGA 151539645 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| |||||| ||||||| ||| | ||| |||| || || ||| Sbjct 151539644 ATGCCTTCCTTATCTTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACT 151539585 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || |||| || || || ||||| ||||| Sbjct 151539584 TCAAGAGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| || | || |||||||||||||||||||| || | | ||||| | || Sbjct 151539294 AAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATC 151539235 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| |||| | | ||||||||| || ||||| ||||| || || Sbjct 151539234 TTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 151539175 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||||| ||||||| ||| | ||||||| | || || || | || | ||| Sbjct 151539174 TTGGATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGT 151539115 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||| || || || || || ||||| Sbjct 151539114 CTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| |||||||||||||| | || ||||| | ||||| |||||||| ||| Sbjct 151539506 GTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTCCAGCTGCTTTCCG 151539447 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | |||||||||||||||||| |||||||| ||||| |||||| ||| Sbjct 151539446 GCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTT 151539387 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| | || || || | |||| || || || |||| || Sbjct 151539386 ACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTTACCAGTCAGGGTC 151539327 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 151539326 TTCACAAATATTTGCAT 151539310 >seq2 Length=170201513 Score = 150 bits (166), Expect = 2e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || ||||||||||| |||||||| || | | |||||| | || Sbjct 31611804 AAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATC 31611745 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | || | || ||||||||| ||||| || |||||||| || Sbjct 31611744 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTC 31611685 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| ||| | ||| |||| | || || || | || | || Sbjct 31611684 TTGGA-TCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGG 31611626 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||||| |||| |||||||| || || |||||| Sbjct 31611625 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||| || |||||||| || | | |||||| | || Sbjct 31611348 AAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATC 31611289 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | || | || ||||||||| ||||| || |||||||| || Sbjct 31611288 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTC 31611229 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| ||| | ||| |||| | || || || | || | || Sbjct 31611228 TTGGA-TCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGG 31611170 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||||| |||| |||||||| || || |||||| Sbjct 31611169 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||| || |||||||| || | |||||| | || Sbjct 31802914 AAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATC 31802855 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | || | || ||||||||| ||||| || |||||||| || Sbjct 31802854 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTC 31802795 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| || ||| ||| | ||| |||| | || || || | ||| | ||| Sbjct 31802794 TTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGT 31802735 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| |||| |||||||| || || |||||| Sbjct 31802734 CTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802701 Score = 132 bits (146), Expect = 5e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||| || || || || || | | ||||| | || Sbjct 31611120 AAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATC 31611061 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | || | || ||||||||| ||||| || |||||||| || Sbjct 31611060 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTC 31611001 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| ||| | ||| |||| | || || || | || | || Sbjct 31611000 TTGGA-TCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGG 31610942 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||||| |||| |||||||| || || |||||| Sbjct 31610941 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31610907 Score = 132 bits (146), Expect = 5e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||| || || || || || | | ||||| | || Sbjct 31611576 AAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATC 31611517 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | || | || ||||||||| ||||| || |||||||| || Sbjct 31611516 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTC 31611457 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| ||| | ||| |||| | || || || | || | || Sbjct 31611456 TTGGA-TCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGG 31611398 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||||| |||| |||||||| || || |||||| Sbjct 31611397 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611363 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || |||||||| || |||||||| || | | || || Sbjct 31802686 AAGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATC 31802627 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||||||||||| | || | || ||||||||| || || || |||||||| || Sbjct 31802626 TTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTC 31802567 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| ||| | ||| |||| | || || || | || | || Sbjct 31802566 TTGGA-TCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGG 31802508 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| |||| |||||||| || || ||||| Sbjct 31802507 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 Score = 129 bits (142), Expect = 6e-25 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||| || || || || || | | |||||| | || Sbjct 31610892 AAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATC 31610833 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | || | || ||||||||| || || || |||||||| || Sbjct 31610832 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTC 31610773 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| ||| | ||| |||| | || ||||| | || | || Sbjct 31610772 TTGGA-TCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGG 31610714 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | ||||| |||| ||||| || || || |||||| Sbjct 31610713 TTTTGCCAGTCAGGGTTTTCACAAAGATCTGCATT 31610679 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || ||||| || || || ||||| || | |||||| | || Sbjct 31803142 AAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGGCCATC 31803083 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || |||||||||||| | || | || ||||||||| ||||| || |||||||| || Sbjct 31803082 TTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTC 31803023 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| || ||| ||| | || |||| | || || || | || | ||| Sbjct 31803022 TTGGATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGT 31802963 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| |||| |||||||| || || |||||| Sbjct 31802962 CTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802929 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||| || || || || || | |||||| | || Sbjct 31803370 AAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAAAGGGTGCGGCCATC 31803311 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | || | || ||||||||| || || || |||||||| || Sbjct 31803310 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTC 31803251 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| || ||| ||| | || |||| | || || || | || | ||| Sbjct 31803250 TTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGT 31803191 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| |||| |||||||| || || |||||| Sbjct 31803190 CTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31803157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499602192789680