Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq1 98.7 1e-15 seq106 89.7 5e-13 >seq2 Length=170201513 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | ||| | | | || ||||| || || |||||||| | Sbjct 31803156 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAA 31803097 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || ||||| || |||| | |||| | | ||| ||||| ||||| Sbjct 31803096 AGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31803037 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| ||| ||| | | || | |||||| | | ||| ||| Sbjct 31803036 ATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTACC 31802977 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| ||||||||||| |||||||| Sbjct 31802976 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802930 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 || || |||| || ||| | || | ||| | | | || || ||||| ||||||||||| Sbjct 31611821 CAACCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCA 31611762 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | || || || || || || || |||| | |||| | | ||| ||||| ||| Sbjct 31611761 GAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGA 31611702 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || |||||||||||||| ||| ||| ||| | | || | ||||| | | ||| Sbjct 31611701 GGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCT 31611642 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || |||||||| ||||||||||| |||||||| Sbjct 31611641 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611592 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| ||||| || ||||| || | | |||| | || || || || || |||| Sbjct 31802669 TTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCAAGCTGCTTGCCGG 31802610 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | | ||| ||||| || || |||||||||||||| ||| ||| ||| | Sbjct 31802609 CAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGA 31802550 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||| | | ||| ||||| | || | || || |||||||| |||| Sbjct 31802549 CATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTT 31802490 Query 138599 TTACAAAAATCTGCATG 138615 ||||||| ||||||||| Sbjct 31802489 TTACAAAGATCTGCATG 31802473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | ||| | | | || || || || ||||||||||| Sbjct 31611362 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAA 31611303 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| | | ||| ||||| ||||| Sbjct 31611302 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611243 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| ||| ||| | | || | ||||| | | ||| ||| Sbjct 31611242 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31611183 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| ||||||||||| |||||||| Sbjct 31611182 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | ||| | | | || || || || ||||||||||| | Sbjct 31802928 CCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAA 31802869 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| | | ||| ||||| ||||| Sbjct 31802868 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31802809 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| ||| ||| | | || | ||||| | | ||| ||| Sbjct 31802808 ATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31802749 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| ||||||||||| |||||||| Sbjct 31802748 TCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802702 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 |||| |||| || ||| | || | ||| | |||| || || || || || ||||| | Sbjct 31803386 AGCCACCTCTCAGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCAC 31803327 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || || || || || || || |||| | |||| | | ||| ||||| || | Sbjct 31803326 AAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 31803267 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | |||||||||||||| ||| ||| ||| | | || | |||||| | | ||| | Sbjct 31803266 GGATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTA 31803207 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || |||||||| ||||||||||| |||||||| Sbjct 31803206 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31803158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | ||| | | | || || || || || || ||||| Sbjct 31611134 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAG-- 31611077 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| |||| || || || || || |||| | |||| | | ||| ||||| |||| Sbjct 31611076 AAAGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAG 31611017 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | |||||||||||||| ||| ||| ||| | | || | ||||| | | ||| | Sbjct 31611016 GGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTA 31610957 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || |||||||| ||||||||||| |||||||| Sbjct 31610956 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31610908 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || || |||| | |||| | | ||| ||||| ||||| |||||||||||| Sbjct 31611518 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTG 31611459 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| ||| ||| | | || | ||||| | | ||| ||||| | || | Sbjct 31611458 TCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATG 31611399 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||||||| ||||||||||| |||||||| Sbjct 31611398 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611364 >seq1 Length=194866763 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| || || | | || || || ||||||||||| || Sbjct 151539536 CCACCTCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539477 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| | | ||| ||||| ||||| Sbjct 151539476 AGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGA 151539417 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| |||||| ||||| | ||| | |||||| | | || || Sbjct 151539416 ATACCTTCTTTGTCT-TGAATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAAC 151539358 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | |||||||||||||| || || ||||| || ||||| Sbjct 151539357 CTCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 >seq106 Length=555726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||||||||| | ||| ||||| ||||| || ||| ||||| || ||||||| Sbjct 346850 TGTACTCCACGATCTCTGTGCACAGGTTACTGCACTTAATGGTGCCCAGGTTCTGCTGAT 346791 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| ||||| || || || || ||| | |||||||| || ||| ||||| Sbjct 346790 TGCTCTTGCGGTTACAGGCATCCTTGTACAGCATGTAGGGAGTGCCAGTCTC 346739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496220081223840