Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 4e-19
seq2 98.7 7e-16
>seq1
Length=194866763
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
|||||| || | ||| || |||||||| |||||||| || ||| | | | |||||
Sbjct 151539291 AACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTC 151539232
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| || |||||||| | ||||| | ||| ||||| ||||| |||||||||||
Sbjct 151539231 CAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTG 151539172
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||||| |||||| | || |||||||| || || || || | ||||||||| ||
Sbjct 151539171 GATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTT 151539112
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| || || ||||| || |||||
Sbjct 151539111 CCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || || || || || ||||| || ||||||||||| ||| | | | |||||
Sbjct 151539519 AACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTC 151539460
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| || || || || | ||||| | ||| |||||| ||||| ||||| |||||
Sbjct 151539459 CAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCTTG 151539400
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|||||| ||||||| |||| || || || || ||| || || | ||| || |||||
Sbjct 151539399 AATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTT 151539340
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||| ||||| || || ||||| ||||||||
Sbjct 151539339 ACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310
Score = 96.9 bits (106), Expect = 2e-15
Identities = 170/243 (70%), Gaps = 6/243 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| ||| | | ||| ||||| || || || || ||||| ||||| || || ||
Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTC--TG 151539023
Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || ||| | ||||| | ||||||||||| | ||||| | ||||| || |
Sbjct 151539022 ATAAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAG 151538963
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||| || || ||||| || ||| |||| ||||| || || || |
Sbjct 151538962 GAATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAA 151538903
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT-TG-AAAT 15185
| |||| || ||||| || || || || ||||| ||||| || ||||| || || ||||
Sbjct 151538902 CTTCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATGTTCTGTAAAT 151538843
Query 15186 AAA 15188
|||
Sbjct 151538842 AAA 151538840
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || ||||| || ||||||||||| |||| | | | ||||| | ||
Sbjct 151539740 TGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGC 151539681
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||| || | ||||| | ||| ||||| ||||| |||||||| || |||||
Sbjct 151539680 TTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTT 151539621
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|||||| | || || || || || || || || | |||||||| || || |||
Sbjct 151539620 GCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTCCCAGTC 151539561
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| || || |||||||| |||||
Sbjct 151539560 AGGGTCTTGACAAAAATCTGCAT 151539538
>seq2
Length=170201513
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | || | ||| ||||| || |||||||| |||||||| ||
Sbjct 31611818 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 31611759
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | || ||||| || | ||||| | ||| ||||| ||
Sbjct 31611758 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611699
Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|| ||||| ||||| || |||||||| ||| | ||||| || || || |||||
Sbjct 31611698 ATACCTTCTTTGTCTTGGATCTTTGCTTTG-ACATTCTCTATTGTGTCACTTGGCTCTAC 31611640
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| ||||| || || ||||| ||||||||||| || |||||
Sbjct 31611639 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611592
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | || | ||| ||||| || ||||| || |||||||| || |
Sbjct 31802928 CCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAA 31802869
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | || |||||||| | ||||| | ||| ||||| ||
Sbjct 31802868 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31802809
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| || || | ||| ||| | ||||| || || || |||||
Sbjct 31802808 ATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31802749
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | |||||||| || || ||||| ||||||||||| || |||||
Sbjct 31802748 TCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802702
Score = 95.1 bits (104), Expect = 9e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| || || || ||||||||||| |||||||| ||| | | ||||| | ||
Sbjct 31802677 ATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCAAGCTG 31802618
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091
||||| || | ||||| | ||| ||||| || || ||||| ||||| || ||
Sbjct 31802617 CTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTT 31802558
Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151
|||||| ||| | ||||| || || || ||||| || | ||| ||||| || || |
Sbjct 31802557 TGCTTTG-ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAG 31802499
Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTTGA 15182
|||| ||||||||||| || ||||| ||||
Sbjct 31802498 TCAGGGTTTTTACAAAGATCTGCATGATTGA 31802468
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | || | ||| ||||| || ||||| || |||||||| ||
Sbjct 31611362 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAA 31611303
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | || ||||| || | ||||| | ||| ||||| ||
Sbjct 31611302 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611243
Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|| ||||| ||||| || |||||||| ||| | ||||| || || || |||||
Sbjct 31611242 ATACCTTCTTTGTCTTGGATCTTTGCTTTG-ACATTCTCTATTGTGTCACTTGGCTCTAC 31611184
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| ||||| || || ||||| ||||||||||| || |||||
Sbjct 31611183 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611136
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | || | ||| ||||| || || || || || ||||| || |
Sbjct 31803156 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAA 31803097
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||||| ||| ||||| || | ||||| | ||| ||||| ||
Sbjct 31803096 AGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31803037
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| || || ||| ||| | ||||| || || || |||||
Sbjct 31803036 ATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTACC 31802977
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| ||||| || || ||||| ||||||||||| || |||||
Sbjct 31802976 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802930
Score = 86.0 bits (94), Expect = 4e-12
Identities = 166/241 (69%), Gaps = 3/241 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | || | ||| ||||| || ||||| || || || || ||
Sbjct 31610906 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31610847
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | || ||||| || | ||||| | ||| ||||| ||
Sbjct 31610846 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31610787
Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|| ||||| ||||| || |||||||| ||| | ||||| || || || || ||
Sbjct 31610786 ATACCTTCTTTGTCTTGGATCTTTGCTTTG-ACATTCTCTATTGTGTCACTTGGCTCAAC 31610728
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAA 15188
|| |||||||||||||| || ||||| ||||| ||||| || ||||| | ||| ||||
Sbjct 31610727 TTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT-TCTGACCTAAA 31610669
Query 15189 T 15189
|
Sbjct 31610668 T 31610668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357362285312270
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