Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 seq1 89.7 5e-13 >seq2 Length=170201513 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| ||||||||||| | | | || |||| || ||||| || || Sbjct 31802670 GTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCAAGCTGCTTGCCG 31802611 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || ||||||| | |||||| || || || || || || ||||| ||| || ||||| Sbjct 31802610 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTT-TGCTTT 31802552 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | ||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 31802551 GACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 31802492 Query 127096 TTTTACAAAAATCTGCATG 127114 ||||||||| ||||||||| Sbjct 31802491 TTTTACAAAGATCTGCATG 31802473 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || ||||| || || | |||||| ||| || ||||| || || Sbjct 31611104 GTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATCTTCCAGCTGCTTGCCG 31611045 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || ||||||| | |||||| || ||||| || || || ||||| ||| || ||||| Sbjct 31611044 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTT-TGCTTT 31610986 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | ||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 31610985 GACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 31610926 Query 127096 TTTTACAAAAATCTGCAT 127113 ||||||||| |||||||| Sbjct 31610925 TTTTACAAAGATCTGCAT 31610908 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| || ||||| || | ||||| ||| || ||||| || || Sbjct 31611788 GTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31611729 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || ||||||| | |||||| || ||||| || || || ||||| ||| || ||||| Sbjct 31611728 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTT-TGCTTT 31611670 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | ||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 31611669 GACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGT 31611610 Query 127096 TTTTACAAAAATCTGCAT 127113 ||||||||| |||||||| Sbjct 31611609 TTTTACAAAGATCTGCAT 31611592 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||| || | | ||||| ||| || ||||| || ||| Sbjct 31802898 GTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 31802839 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || ||||| || || || ||||| ||| || ||| Sbjct 31802838 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTCCTTTG 31802779 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | ||| || || | || | || ||||| ||||| ||| Sbjct 31802778 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTT 31802719 Query 127097 TTTACAAAAATCTGCAT 127113 |||||||| |||||||| Sbjct 31802718 TTTACAAAGATCTGCAT 31802702 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || |||||||| || | | ||||| ||| ||||| || || || Sbjct 31803126 GTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGGCCATCTTCTAGTTGCTTGCCG 31803067 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || ||||| || || || ||||| ||| || || Sbjct 31803066 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGATTTA 31803007 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| ||||| ||| Sbjct 31803006 ACATTCTCTATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31802947 Query 127097 TTTACAAAAATCTGCAT 127113 |||||||| |||||||| Sbjct 31802946 TTTACAAAGATCTGCAT 31802930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||| || | ||||| ||| || ||||| || || Sbjct 31611332 GTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31611273 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || ||||||| | |||||| || ||||| || || || ||||| ||| || ||||| Sbjct 31611272 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTT-TGCTTT 31611214 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | ||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 31611213 GACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 31611154 Query 127096 TTTTACAAAAATCTGCAT 127113 ||||||||| |||||||| Sbjct 31611153 TTTTACAAAGATCTGCAT 31611136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || ||||| || || | ||||| ||| || ||||| || || Sbjct 31611560 GTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGCTTGCCG 31611501 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || ||||||| | |||||| || ||||| || || || ||||| ||| || ||||| Sbjct 31611500 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTT-TGCTTT 31611442 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | ||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 31611441 GACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 31611382 Query 127096 TTTTACAAAAATCTGCAT 127113 ||||||||| |||||||| Sbjct 31611381 TTTTACAAAGATCTGCAT 31611364 >seq1 Length=194866763 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||||||||| ||||| || | |||||| ||| || ||||| || ||| Sbjct 151539278 GTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCA 151539219 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||||| |||||| || || || ||||| |||||||| |||||| ||| Sbjct 151539218 GCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTTGCCTTT 151539159 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || || | ||| || || | ||| | || || || ||||| || Sbjct 151539158 ACATTCTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTTCCCAGTCAGGGTC 151539099 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 151539098 TTCACAAATATCTGCAT 151539082 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| ||||| |||||||| | ||||| ||| || ||||| || || Sbjct 151539734 GTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 151539675 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || ||||| ||||| || |||||| ||| Sbjct 151539674 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTTGCCTTT 151539615 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | ||| ||||| | || | || || || ||||| || Sbjct 151539614 ACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTCCCAGTCAGGGTC 151539555 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 151539554 TTGACAAAAATCTGCAT 151539538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475460251669280