Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 9e-16 seq1 93.3 4e-14 >seq2 Length=170201513 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || ||||| || ||||||||||| || | ||| ||| ||| Sbjct 31610888 ACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCTTCC 31610829 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||| | |||||||| || || || |||||||| ||||| Sbjct 31610828 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGG 31610769 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||||| |||| ||||| | ||| ||||| | |||| |||||| Sbjct 31610768 ATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTTTTG 31610709 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| ||||| || ||||| Sbjct 31610708 CCAGTCAGGGTTTTCACAAAGATCTGCAT 31610680 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || ||||| || ||||| || || || | | ||| ||| ||| Sbjct 31802910 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCC 31802851 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||| | |||||||| || || || |||||||| ||||| Sbjct 31802850 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31802791 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||||| |||| ||||| | ||| || || ||||||| || ||| Sbjct 31802790 ATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTG 31802731 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| || ||||| Sbjct 31802730 CCAGTCAGGGTTTTTACAAAGATCTGCAT 31802702 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || |||||||| |||||||| || || | | ||| ||| || Sbjct 31803138 ACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGGCCATCTTCT 31803079 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || || | ||||| | |||||||| || || || |||||||| ||||| Sbjct 31803078 AGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31803019 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||| | |||| |||||| | ||| || || || || | || ||| Sbjct 31803018 ATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTG 31802959 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| || ||||| Sbjct 31802958 CCAGTCAGGGTTTTTACAAAGATCTGCAT 31802930 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| |||||||| || ||||||||||| || | | ||| ||| ||| Sbjct 31803366 ACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAAAGGGTGCGGCCATCTTCC 31803307 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||| | |||||||| || || || |||||||| ||||| Sbjct 31803306 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGG 31803247 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||| | || | |||||| | ||| || || || || | || ||| Sbjct 31803246 ATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTG 31803187 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| || ||||| Sbjct 31803186 CCAGTCAGGGTTTTTACAAAGATCTGCAT 31803158 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || |||||||| || ||||| || ||||||||||| || || || | || ||| | Sbjct 31611116 ACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCA--GAAAGTGTGCGACCATCTT 31611059 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| || || || || | ||||| | |||||||| || || || |||||||| |||| Sbjct 31611058 CCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTT 31610999 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || ||| ||||| |||| ||||| | ||| || || || || | || | Sbjct 31610998 GGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCT 31610939 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || ||||||||||| || ||||| Sbjct 31610938 TGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31610908 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || |||||||| || ||||| || ||||||||||| || || || | | ||| | Sbjct 31611572 ACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCA--GAAAGTGTGCGGCCATCTT 31611515 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| || || || || | ||||| | |||||||| || || || |||||||| |||| Sbjct 31611514 CCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTT 31611455 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || ||| ||||| |||| ||||| | ||| || || || || | || | Sbjct 31611454 GGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCT 31611395 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || ||||||||||| || ||||| Sbjct 31611394 TGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611364 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT-GACGGTTTTAGAATCGT 45189 || |||||||| ||||| || ||||| ||||| ||||| || ||| | |||| | Sbjct 31802682 ACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCAAGAC--TACGGCAATCTT 31802625 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || || || || | ||||| | |||||||| || || || |||||||| |||| Sbjct 31802624 CAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTT 31802565 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || ||| ||||| |||| ||||| | ||| || || || || | || | Sbjct 31802564 GGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCT 31802505 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || ||||||||||| || ||||| Sbjct 31802504 TGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || ||||| || ||||| || || || | ||| ||| ||| Sbjct 31611344 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 31611285 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||| | |||||||| || || || |||||||| ||||| Sbjct 31611284 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31611225 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||||| |||| ||||| | ||| || || || || | || ||| Sbjct 31611224 ATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTG 31611165 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| || ||||| Sbjct 31611164 CCAGTCAGGGTTTTTACAAAGATCTGCAT 31611136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || ||||| |||||||| || || || | ||| ||| ||| Sbjct 31611800 ACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 31611741 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||| | |||||||| || || || |||||||| ||||| Sbjct 31611740 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31611681 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||||| |||| ||||| | ||| || || | || | || ||| Sbjct 31611680 ATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTG 31611621 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| || ||||| Sbjct 31611620 CCAGTCAGGGTTTTTACAAAGATCTGCAT 31611592 >seq1 Length=194866763 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || |||||||||||||| ||||| || | |||| ||| |||| || Sbjct 151539057 ATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCCAGCTG 151538998 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | ||||| | ||| || || || ||||||||||||||||| || ||||| Sbjct 151538997 TTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGTATTTT 151538938 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | ||| | ||||| | ||| ||||| || || | || || || || Sbjct 151538937 AGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAGT 151538878 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || ||||| Sbjct 151538877 GAGCGTTTTCACAAATATCTGCAT 151538854 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || ||||| || || || || ||||| || || ||| |||| || Sbjct 151539512 TGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTCCAGCTGC 151539453 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||||| |||||||| || ||||| |||||||| |||||||||||| Sbjct 151539452 TTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTT 151539393 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | |||||| | || || || || || | ||||| || || Sbjct 151539392 GCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTTACCAGTC 151539333 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||||||| Sbjct 151539332 AGGGTCTTCACAAATATTTGCATC 151539309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || ||||| || ||||| || || || || ||||| || || ||| ||| Sbjct 151539746 ACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCC 151539687 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || ||||| | ||||| | |||||||| || ||||||||||| |||||||| Sbjct 151539686 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGG 151539627 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| || | || | ||||| | ||| ||||| ||||||| || || Sbjct 151539626 ATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTC 151539567 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || |||||||| |||||| Sbjct 151539566 CCAGTCAGGGTCTTGACAAAAATCTGCATC 151539537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451964655427120