Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 2e-14 >seq4 Length=133473341 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| |||||| || | ||||| || | ||| ||||||| || || || Sbjct 109202430 CTTACCCCATGGCCCAATGCTTTGGTGAAGGCAGCCCCTTTGGCCATATCTGTTCTGAAG 109202371 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || |||||||| |||||||| | |||||||| ||||| | |||| ||| || || || Sbjct 109202370 AACTGGTGTGTGAAGTGTTGAGCAAAAAAAGCAAACATAACATTGGAGCCTTGAGGGTCA 109202311 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCAC 10276 || ||||| | || || || | | ||| ||||| Sbjct 109202310 GGAATAAATTTTCTTCGCATCAGGAATTTCTCCAC 109202276 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||||| || || | || |||||||||||||| || ||||||| || | ||| Sbjct 109201546 TCACCTTTAACTCCCATTGGGGTAGGGCAGTCACGTTCCACAGGAGGCAAGGTACGAGTA 109201487 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| || ||||| |||||||| || || ||||| | ||| || Sbjct 109201486 TAATAGGACAGATTGGAGAATGCCTCCCAGCTTTTATATCCATAGTGGCTGTTATACGTG 109201427 Query 10507 GGGGGACTGTCAATCA 10522 || || |||||||||| Sbjct 109201426 GGTGGGCTGTCAATCA 109201411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723666284094800