Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq106 87.8 3e-12 >seq106 Length=555726 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || | | ||||||| | ||||||| ||| || || || | | Sbjct 352828 CCTGCTTCCAGCCAAAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCTGCGACAT 352769 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | |||||||| |||||||| ||||||||||| | | | ||||| ||||| | || | Sbjct 352768 GGATGTTCAGTGACTGGCTCTGGTCGATGAACGCTCCTCTGTCTGCCGCCATTGTAATCA 352709 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 |||||||| || || ||||||||||||||| ||| Sbjct 352708 CCGTCTTCTGAGATATTTCCCACACCGTCTTGTACA 352673 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||||||||| ||||||| ||||| |||||| | |||| | |||||| || Sbjct 346846 CTCCACGATCTCTGTGCACAGGTTACTGCACTTAATGGTGCCCAGGTTCTGCTGATTGCT 346787 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA 204999 |||||||||||||| |||||||||| |||| | || | || ||||| |||| || Sbjct 346786 CTTGCGGTTACAGGCATCCTTGTACAGCATGTAGGGAGTGCCAGTCTCCGTCTGCGA 346730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795087393140320