Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 129 1e-24
seq1 120 7e-22
>seq2
Length=170201513
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || || || || || ||||||| ||||||||||| | || | ||||||
Sbjct 31611803 AGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611744
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| ||||| | | ||||||||| ||| || |||||| ||
Sbjct 31611743 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611684
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| |||||| || || || | ||||| ||| ||||| ||||| ||||| |||
Sbjct 31611683 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTC 31611624
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || ||||| ||||| || ||
Sbjct 31611623 TTGCCAGTCAGGGTTTTTACAAAGATCTG 31611595
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || || || || || || |||| ||||||||||| | || | ||||||
Sbjct 31611347 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611288
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| ||||| | | ||||||||| ||| || |||||| ||
Sbjct 31611287 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611228
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| |||||| || || || | ||||| ||| ||||| |||| ||||| |||
Sbjct 31611227 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31611168
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || ||||| ||||| || ||
Sbjct 31611167 TTGCCAGTCAGGGTTTTTACAAAGATCTG 31611139
Score = 114 bits (126), Expect = 3e-20
Identities = 153/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG--TCCTTCCAT 199475
|||||||| || ||||| || || || |||| || |||||| ||||| | | ||||
Sbjct 31803369 AGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCA--CAAAGGGTGCGGCCAT 31803312
Query 199476 CTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCT 199535
||||||||||||| ||||| ||||| | | ||||||||| || || |||||| |
Sbjct 31803311 CTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGT 31803252
Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595
| || |||||| || || || | |||||| ||| ||||| |||| ||||| |
Sbjct 31803251 CTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATGG 31803192
Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| || || || ||||| ||||| || ||
Sbjct 31803191 TCTTGCCAGTCAGGGTTTTTACAAAGATCTG 31803161
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || || || || || || |||| || ||||||| | || | ||||||
Sbjct 31611119 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATCT 31611060
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| ||||| | | ||||||||| ||| || |||||| ||
Sbjct 31611059 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611000
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| |||||| || || || | ||||| ||| ||||| |||| ||||| |||
Sbjct 31610999 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31610940
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || ||||| ||||| || ||
Sbjct 31610939 TTGCCAGTCAGGGTTTTTACAAAGATCTG 31610911
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || || || || || || |||| || ||||||| | || | ||||||
Sbjct 31611575 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCT 31611516
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| ||||| | | ||||||||| ||| || |||||| ||
Sbjct 31611515 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611456
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| |||||| || || || | ||||| ||| ||||| |||| ||||| |||
Sbjct 31611455 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31611396
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || ||||| ||||| || ||
Sbjct 31611395 TTGCCAGTCAGGGTTTTTACAAAGATCTG 31611367
Score = 105 bits (116), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG--TCCTTCCAT 199475
|| ||||| || || || || || || |||| |||||||||| ||||| | | ||||
Sbjct 31802913 AGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA--CAAAGGGTGCGGCCAT 31802856
Query 199476 CTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCT 199535
||||||||||||| || || ||||| | | ||||||||| ||| || |||||| |
Sbjct 31802855 CTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGT 31802796
Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595
| || |||||| || || || | ||||| ||| ||||| |||| || || |
Sbjct 31802795 CTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGG 31802736
Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| || || || ||||| ||||| || ||
Sbjct 31802735 TCTTGCCAGTCAGGGTTTTTACAAAGATCTG 31802705
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || || || || || || |||| || ||||||| | || | ||||||
Sbjct 31610891 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCT 31610832
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| ||||| | | ||||||||| || || |||||| ||
Sbjct 31610831 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31610772
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| |||||| || || || | ||||| ||| || || ||||| || || ||
Sbjct 31610771 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTT 31610712
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || ||||||||||| || ||
Sbjct 31610711 TTGCCAGTCAGGGTTTTCACAAAGATCTG 31610683
>seq1
Length=194866763
Score = 120 bits (132), Expect = 7e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || || || || || | |||||| |||| | || | ||||||
Sbjct 151539521 AGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCT 151539462
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||||||||| ||||| | | ||||||||| ||| ||| |||||| ||
Sbjct 151539461 TCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCT 151539402
Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||||| |||||| || || ||| | |||||| ||| ||| || || | || || ||
Sbjct 151539401 TGAAT-TTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGT 151539343
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || |||||||| |||||
Sbjct 151539342 TTTACCAGTCAGGGTCTTCACAAATATTTG 151539313
Score = 109 bits (120), Expect = 1e-18
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| ||||| || |||||||||| ||| ||||| | || || | ||||||||||||||
Sbjct 151539056 TGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCCAGCTGT 151538997
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|| || || ||||| | | || || || ||| ||| |||||| ||||| || ||
Sbjct 151538996 TTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGTATTTTA 151538937
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
|||||| ||| | ||||| ||| || || || | ||||| ||||| || |||
Sbjct 151538936 GCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAGTG 151538877
Query 199607 AGAGTTTTCACAAAAATTTG 199626
|| ||||||||||| || ||
Sbjct 151538876 AGCGTTTTCACAAATATCTG 151538857
Score = 89.7 bits (98), Expect = 1e-12
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || || || || || | |||||| |||| | ||| | ||||||
Sbjct 151539749 AGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCT 151539690
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || ||||| | | ||||||||| || ||| ||||| ||
Sbjct 151539689 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCT 151539630
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| || ||| ||| || || | ||||| | | || || || | || || |||
Sbjct 151539629 TGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTC 151539570
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || |||||||| ||
Sbjct 151539569 TTCCCAGTCAGGGTCTTGACAAAAATCTG 151539541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178818554147074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |