Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 129 1e-24 seq1 120 7e-22 >seq2 Length=170201513 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || || || || || ||||||| ||||||||||| | || | |||||| Sbjct 31611803 AGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611744 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| | | ||||||||| ||| || |||||| || Sbjct 31611743 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611684 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| || || || | ||||| ||| ||||| ||||| ||||| ||| Sbjct 31611683 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTC 31611624 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| ||||| || || Sbjct 31611623 TTGCCAGTCAGGGTTTTTACAAAGATCTG 31611595 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || || || || || || |||| ||||||||||| | || | |||||| Sbjct 31611347 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611288 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| | | ||||||||| ||| || |||||| || Sbjct 31611287 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611228 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| || || || | ||||| ||| ||||| |||| ||||| ||| Sbjct 31611227 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31611168 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| ||||| || || Sbjct 31611167 TTGCCAGTCAGGGTTTTTACAAAGATCTG 31611139 Score = 114 bits (126), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG--TCCTTCCAT 199475 |||||||| || ||||| || || || |||| || |||||| ||||| | | |||| Sbjct 31803369 AGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCA--CAAAGGGTGCGGCCAT 31803312 Query 199476 CTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCT 199535 ||||||||||||| ||||| ||||| | | ||||||||| || || |||||| | Sbjct 31803311 CTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGT 31803252 Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 | || |||||| || || || | |||||| ||| ||||| |||| ||||| | Sbjct 31803251 CTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATGG 31803192 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || ||||| ||||| || || Sbjct 31803191 TCTTGCCAGTCAGGGTTTTTACAAAGATCTG 31803161 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || || || || || || |||| || ||||||| | || | |||||| Sbjct 31611119 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATCT 31611060 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| | | ||||||||| ||| || |||||| || Sbjct 31611059 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611000 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| || || || | ||||| ||| ||||| |||| ||||| ||| Sbjct 31610999 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31610940 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| ||||| || || Sbjct 31610939 TTGCCAGTCAGGGTTTTTACAAAGATCTG 31610911 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || || || || || || |||| || ||||||| | || | |||||| Sbjct 31611575 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCT 31611516 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| | | ||||||||| ||| || |||||| || Sbjct 31611515 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611456 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| || || || | ||||| ||| ||||| |||| ||||| ||| Sbjct 31611455 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31611396 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| ||||| || || Sbjct 31611395 TTGCCAGTCAGGGTTTTTACAAAGATCTG 31611367 Score = 105 bits (116), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG--TCCTTCCAT 199475 || ||||| || || || || || || |||| |||||||||| ||||| | | |||| Sbjct 31802913 AGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA--CAAAGGGTGCGGCCAT 31802856 Query 199476 CTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCT 199535 ||||||||||||| || || ||||| | | ||||||||| ||| || |||||| | Sbjct 31802855 CTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGT 31802796 Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 | || |||||| || || || | ||||| ||| ||||| |||| || || | Sbjct 31802795 CTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGG 31802736 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || ||||| ||||| || || Sbjct 31802735 TCTTGCCAGTCAGGGTTTTTACAAAGATCTG 31802705 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || || || || || || |||| || ||||||| | || | |||||| Sbjct 31610891 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCT 31610832 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| | | ||||||||| || || |||||| || Sbjct 31610831 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31610772 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| || || || | ||||| ||| || || ||||| || || || Sbjct 31610771 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTT 31610712 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||||||||| || || Sbjct 31610711 TTGCCAGTCAGGGTTTTCACAAAGATCTG 31610683 >seq1 Length=194866763 Score = 120 bits (132), Expect = 7e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || || || || | |||||| |||| | || | |||||| Sbjct 151539521 AGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCT 151539462 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| | | ||||||||| ||| ||| |||||| || Sbjct 151539461 TCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCT 151539402 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| |||||| || || ||| | |||||| ||| ||| || || | || || || Sbjct 151539401 TGAAT-TTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGT 151539343 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| ||||| Sbjct 151539342 TTTACCAGTCAGGGTCTTCACAAATATTTG 151539313 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || |||||||||| ||| ||||| | || || | |||||||||||||| Sbjct 151539056 TGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCCAGCTGT 151538997 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| | | || || || ||| ||| |||||| ||||| || || Sbjct 151538996 TTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGTATTTTA 151538937 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| ||| | ||||| ||| || || || | ||||| ||||| || ||| Sbjct 151538936 GCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAGTG 151538877 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || || Sbjct 151538876 AGCGTTTTCACAAATATCTG 151538857 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || || || || || | |||||| |||| | ||| | |||||| Sbjct 151539749 AGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCT 151539690 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| | | ||||||||| || ||| ||||| || Sbjct 151539689 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCT 151539630 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || ||| ||| || || | ||||| | | || || || | || || ||| Sbjct 151539629 TGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTC 151539570 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || |||||||| || Sbjct 151539569 TTCCCAGTCAGGGTCTTGACAAAAATCTG 151539541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178818554147074