Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq1 95.1 1e-14 >seq2 Length=170201513 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || ||||||| || || |||||||| |||||||| || Sbjct 31611818 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 31611759 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 31611758 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611699 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| || | | ||||| || | || || Sbjct 31611698 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31611639 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 31611638 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || ||||||| || || || |||||||| ||||| || Sbjct 31610906 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31610847 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 31610846 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31610787 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| || | | ||||| || | || || Sbjct 31610786 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAACT 31610727 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| || ||||||||||| ||||| ||||| |||||||| |||||| || Sbjct 31610726 TCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTCTG 31610676 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || ||||||| || || || |||||||| ||||| || Sbjct 31611134 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31611075 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 31611074 AGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611015 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| || | | ||||| || | || || Sbjct 31611014 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31610955 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 31610954 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31610907 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || ||||||| || || || ||||| |||||||| || Sbjct 31611362 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAA 31611303 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 31611302 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611243 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| || | | ||||| || | || || Sbjct 31611242 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31611183 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 31611182 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || ||||||| || || || |||||||| ||||| || Sbjct 31611590 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31611531 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 31611530 AGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611471 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| || | | ||||| || | || || Sbjct 31611470 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31611411 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 31611410 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611363 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || ||||||| || ||||| |||||||||||||| | Sbjct 31803156 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAA 31803097 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || ||||||||||| || ||||| | ||||||||| | || Sbjct 31803096 AGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31803037 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| || | || | | ||||| || | || || Sbjct 31803036 ATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTACC 31802977 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 31802976 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802929 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| ||||| | ||| | || ||||||| || || || |||||||| ||||| | Sbjct 31803385 GCCACCTCTCAGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACA 31803326 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| | || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 31803325 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 31803266 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | || ||||| |||||| || | || | | ||||| || | || || Sbjct 31803265 GATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTAC 31803206 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 31803205 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31803157 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || ||||||| || || || ||||| |||||||| | Sbjct 31802928 CCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAA 31802869 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || ||||| | ||||||||| | || Sbjct 31802868 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31802809 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| || | | ||||| || | || || Sbjct 31802808 ATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31802749 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || ||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 31802748 TCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802701 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | || ||||||| || ||| ||||| |||||||| || | Sbjct 31802700 CCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCA 31802641 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||| | || || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 31802640 AGACTACGGCAATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31802581 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| || | | ||||| || | || || Sbjct 31802580 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31802521 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 31802520 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 >seq1 Length=194866763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || | ||||| || || ||||| || |||||||| || Sbjct 151539308 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 151539249 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || ||||| | ||||||||| | || Sbjct 151539248 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 151539189 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| ||| || ||| | || | | || || || | || || Sbjct 151539188 ATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACC 151539129 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| || || ||||| || || ||||| || ||||| Sbjct 151539128 TCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || ||||| | ||||| |||| || || || || || ||||| || || Sbjct 151539764 CCACCCCTCAAACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539705 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || ||||| | ||||||||| | || Sbjct 151539704 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGA 151539645 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| || ||| || ||| | || | | ||||| || | || || Sbjct 151539644 ATGCCTTCCTTATCTTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACT 151539585 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| || || ||||| || || ||||| || ||||| Sbjct 151539584 TCAAGAGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | |||| |||| ||| || || || || ||||| || || Sbjct 151539536 CCACCTCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539477 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| ||||| || ||||| | ||||||||||| || Sbjct 151539476 AGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGA 151539417 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | || |||| | ||| || | | || | | | | ||||| || | ||| || Sbjct 151539416 ATACCTTCTTTGT-CTTGAATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAAC 151539358 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || || ||||| || ||||| || || ||||| |||||||| Sbjct 151539357 CTCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| ||||| | |||| ||||| || ||||||||||| || ||||| ||| Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGAT 151539021 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || ||||| ||||| || || ||||| | || || || | || Sbjct 151539020 AAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGA 151538961 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| || || ||| | | | | ||||| || | || || Sbjct 151538960 ATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACT 151538901 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | |||||||| || || || |||||||| ||||| || ||||| || Sbjct 151538900 TCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATGTT 151538851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565190199295440