Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 132 5e-26 seq1 131 2e-25 >seq2 Length=170201513 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || |||||||| || || ||||| ||||||||| | || || ||| | | Sbjct 31611591 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGAGCCAAG 31611650 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | |||| ||| |||| |||||||| || || || | ||||| Sbjct 31611651 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611710 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 31611711 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611770 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || |||||| | || || ||| ||||||| || Sbjct 31611771 CATCCAAAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31611818 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || |||||||| || || ||||| ||||||||| | || || ||| | | Sbjct 31611135 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611194 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | |||| ||| |||| |||||||| || || || | ||||| Sbjct 31611195 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611254 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 31611255 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611314 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || |||||| | || || ||| ||||||| || Sbjct 31611315 CATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31611362 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || || ||||||||||| ||| | || || ||| | | Sbjct 31610679 AATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTTGAGCCAAG 31610738 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | |||| ||| |||| |||||||| || || ||| | ||||| Sbjct 31610739 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCA 31610798 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| |||||||| || | |||||||| ||||| || Sbjct 31610799 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTATAA 31610858 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || |||||| | || || ||| ||||||| || Sbjct 31610859 TATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31610906 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || |||||||| || || ||||| ||||| || | || || ||| | | Sbjct 31802701 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGAGCCAAG 31802760 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | |||| ||| |||| |||||||| || || || | ||||| Sbjct 31802761 TGACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31802820 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 31802821 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAA 31802880 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || |||||| | || || ||| ||||||| || Sbjct 31802881 CATCCAGAAAGAATCCACCCTGCATCTTGTACTTCGTCTGAGAGGTGG 31802928 >seq1 Length=194866763 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| ||||| || ||||||||||| || || |||||||| | || || ||| | Sbjct 151538851 AACATGCAGATATTTGTGAAAACGCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCA 151538910 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | || | ||||| | || ||||| || ||||| | || Sbjct 151538911 AGTGACACTATTGAAAATGTGAAGGCTAAAATACAGGATAAAGAAGGCATTCCTCCAGAT 151538970 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || |||||||||||||| || | || ||| | ||||| Sbjct 151538971 CAACAAAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGAACCTTATCAGACTAT 151539030 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| | || ||||||||||| || ||||||||||| || Sbjct 151539031 AACATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGTTTGAGAGGTGG 151539080 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || || || || ||||| || ||| | || || || | | Sbjct 151539310 ATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGT 151539369 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| |||||| | |||||||| || ||||| ||||||| Sbjct 151539370 GACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAG 151539429 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || || || |||||||| || | ||||| ||| || |||||| Sbjct 151539430 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAAC 151539489 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || ||||| ||||| || ||| | ||||| || Sbjct 151539490 ATTCAGAAAGAATCCACACTGCACTTGGTTCTTCGTCTCAGAGGTGG 151539536 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || || || || ||||| ||| | || || ||| | | Sbjct 151539082 ATGCAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGAGCCAAGT 151539141 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | |||||||| ||||| || || |||||| | ||||| Sbjct 151539142 GATACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAG 151539201 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| || ||||| |||||||| || | ||||| || ||||||||| Sbjct 151539202 CAGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 151539261 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || |||| || || || ||| | ||||| || Sbjct 151539262 ATTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGG 151539308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500130147764480