Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq8 226 1e-53 seq1 116 1e-20 seq4 89.7 2e-12 seq7 87.8 7e-12 >seq8 Length=117616046 Score = 226 bits (250), Expect = 1e-53 Identities = 447/651 (69%), Gaps = 24/651 (4%) Strand=Plus/Minus Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT- 451950 || ||||| ||||| ||||| |||||||| ||||| ||||||||| | ||| | || | Sbjct 52784605 ATAGATGAGATTGTCCTTGTGGGAGGTTCCACACGCATTCCTAAAGTGCAAAAATTGCTT 52784546 Query 451951 ---GTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGT 452007 | |||||| | | || | | ||| |||||| ||||||||||||||||||| Sbjct 52784545 CAAGACTTCTTTAATGGCAG----AGAGCTAAACAAGAGCATAAATCCTGATGAAGCTGT 52784490 Query 452008 TGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTT-CAGATGATGAAAAATTAG 452066 |||||||| ||||| || || || || || |||| ||| || || | || || | Sbjct 52784489 GGCATATGGAGCTGCTGTACAGGCTGCCATCCTAATGGGTGACAAATCA-GAGAATGTGC 52784431 Query 452067 GAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAA 452126 ||| | || | | ||||| ||||| |||| || || | || ||||| || ||| Sbjct 52784430 AAGACTTACTTCTGCTGGATGTTGCACCTTTATCACTGGGCTTGGAGACAGCAGGAGGAG 52784371 Query 452127 TGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTA 452186 | |||||| | || |||||| || |||| || || ||| || || |||| Sbjct 52784370 TAATGACTGTGCTTATCAAACGAAACACAACTATCCCAACCAAGCAGACACAGACCTTTA 52784311 Query 452187 GTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAA 452246 ||| ||| || || || |||||| ||| || |||||||| ||||| | || | Sbjct 52784310 CAACATACTCTGACAATCAGCCTGGTGTACTTATCCAGGTGTTTGAGGGAGAGAGGGCTA 52784251 Query 452247 TGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAAC---ATTCCTCCTATGC 452303 |||| ||| |||||| | || ||| || || || ||||| ||| | Sbjct 52784250 TGACCAAAGACAATAATCTTTTGGG-GAAGTTTGAGTT--AAGTGGAATTCCCCCTGCTC 52784194 Query 452304 CAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATG 452363 | || ||| |||||| |||||| | |||| ||| ||||||| ||||| || || |||| Sbjct 52784193 CTAGAGGAGTTCCTCAGATTGAAGTCACCTTTGACATTGATGCTAATGGCATACTAAATG 52784134 Query 452364 TGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAA-ATTACAATTACTAATGATAAA 452422 | ||| || ||||| ||||| ||| ||||| || ||||||||||| ||||| ||| Sbjct 52784133 TTTCTGCTGTGGAAAAGAGCTCTGGCAAA-CAGAATAAGATTACAATTACAAATGACAAA 52784075 Query 452423 AACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAG--- 452479 || | |||||| || |||||||| |||||| | || ||||||| | |||| Sbjct 52784074 GGGCGGCTGAGTAAAGAGGACATTGAAAAGATGGTACAGGAGGCAGAAAGGTACAAGGCT 52784015 Query 452480 GATGATGATGAACAAGTTAGAAAACATGTTGAAGCTAAAAACAAACTAGAA 452530 |||||||||| ||| ||| || | |||| || |||||| ||||||| Sbjct 52784014 GATGATGATGCTCAA---AGAGAAAAGATTGATGCCAAAAACTCACTAGAA 52783967 Score = 208 bits (230), Expect = 3e-48 Identities = 473/707 (67%), Gaps = 11/707 (2%) Strand=Plus/Minus Query 450904 CAAAAAAGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCA 450963 |||| ||| ||| |||| |||||||| || || |||| || || || ||||||| ||| Sbjct 52785590 CAAAGGAGTCGCAGTTGGCATTGATCTCGGCACTACCTACTCCTGCGTTGGTGTTTTCCA 52785531 Query 450964 AAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGT 451023 |||| || ||||| || || || ||||||||||| || || |||||| | || Sbjct 52785530 GCATGGTAAAGTAGAGATCATCGCTAATGACCAAGGGAATCGCACCACTCCTAGCTATGT 52785471 Query 451024 AAGTTTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCA 451081 ||| || ||| ||||||| | | || | || || || ||||| | ||| Sbjct 52785470 GGCTTTCACAGATACAGAAAGGTTGATTGGTGATGCAGCCAAGAATCAAGTGGCAATG-- 52785413 Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | || ||||| | ||||||||| | | || || | | || | ||||| Sbjct 52785412 AATCCCCAGAATACAGTCTTTGATGCTAAGAGACTTATAGGAAGAAAGTTTAATGATCCC 52785353 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 || || ||| || || | | | || |||| | | || ||||| Sbjct 52785352 GTCGTTCAGTCAGACCTGAAGCACTGGCCGTTCCAAGTGGTAAGCGATCATGGGAAGCCA 52785293 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | || |||| | | |||||| || ||||| || ||| || || || |||||| Sbjct 52785292 AAGGTTAAAGTGGAGTTTAAAGGAGAGGAGAAAACCTTCTTTCCCGAGGAGATCTCATCT 52785233 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||||| |||| || |||||||| ||||||||| || | || | ||||| || Sbjct 52785232 ATGGTGCTTATAAAGATGAAAGAGACAGCAGAAGCTTACCTGGGCCACGCTGTTACCAAT 52785173 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || |||||||| || || || || |||||| | || | || || || || ||||| Sbjct 52785172 GCTGTTATTACTGTGCCAGCCTACTTTAATGATTCTCAGAGACAGGCCACAAAGGATGCT 52785113 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| || |||||||| | |||| || ||||| ||||||||||||||| | Sbjct 52785112 GGTGTCATTGCAGGACTAAATGTTTTGAGAATCATCAATGAGCCTACAGCAGCTGCTATT 52785053 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGA--AGaaaaaaaTATTTTAGTATTTGATT 451499 || ||||| |||| || ||| ||| |||| ||| ||| || | | ||||||| Sbjct 52785052 GCTTATGGCCTAG----AT-AAAGGAACCAGAGGAGAGCGCAATGTTCTTATCTTTGATT 52784998 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | || || ||||| ||| || | ||| | || || ||||| | |||||||| | Sbjct 52784997 TGGGAGGTGGAACATTCGATGTCTCCATCCTTACTATAGATGATGGCATCTTTGAAGTTA 52784938 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||||||| ||||| || |||||||| || ||||| |||| ||| Sbjct 52784937 AGGCAACAGCAGGTGACACACATCTAGGTGGAGAAGACTTTGACAAT 52784891 Score = 87.8 bits (96), Expect = 7e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || | ||||| || |||||||||||||||||||| || |||||||| Sbjct 10429285 GTTACTCATGCTGTTGTCACTGTACCTGCTTATTTCAATGATGCACAGCGTCAAGCAACC 10429344 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 || |||||||| |||||| || | ||||| | | || || ||||| || Sbjct 10429345 AAGGATGCAGGGACTATTGCAGGGCTGAATGTCATGAGGATCATCAATGAGCC 10429397 Score = 87.8 bits (96), Expect = 7e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 451464 AAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACT 451522 |||||| | | ||| || || || | || |||||||| ||||| || ||| |||| | Sbjct 10430146 AAGAAAGAAGGAGAGAAGAACATCCTTGTGTTTGATTTGGGTGGTGGTACTTTTGATGTT 10430205 Query 451523 TCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCAT 451582 || ||||| | ||||| |||| || |||||||| || || |||||||||||||| Sbjct 10430206 TCCCTACTTACCATTGACAATGGTGTCTTTGAAGTGGTAGCTACTAATGGTGATACTCAC 10430265 Query 451583 CTAGGAGGTGAAGATATTGA 451602 || ||||| ||||| |||| Sbjct 10430266 CTTGGAGGAGAAGACTTTGA 10430285 >seq1 Length=194866763 Score = 116 bits (128), Expect = 1e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || || || |||||||||||||| || || ||||| |||||| || ||| Sbjct 151539315 AATATTT--GTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGTGAC 151539372 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||||||| | | ||| |||||||||||| || ||||| |||||||| || || || Sbjct 151539373 ACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAGCAG 151539432 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 | || || || | || || || || |||||||| | || | | ||||| || ||| Sbjct 151539433 AGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAACATT 151539492 Query 391233 GATAAGGATGCAACACTTCACTTAGT 391258 | || || | ||||| ||||| || Sbjct 151539493 CAGAAAGAATCCACACTGCACTTGGT 151539518 Score = 102 bits (112), Expect = 3e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || |||||||| || || ||||||||||| ||||| | | Sbjct 151539538 ATGCAGATTTTTGTCAAGACCCTGACTGGGAAGACCATTACTCTTGAAGTTGAGCCCAGT 151539597 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || |||||| |||||||||||||| ||||| ||||| || Sbjct 151539598 GACACAATTGAGAATGTAAAGGCAAAAATCCAAGATAAGGAAGGCATTCCCCCTGACCAG 151539657 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || |||| || || || |||||||| | ||| | | ||||| || Sbjct 151539658 CAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTACAAC 151539717 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || || ||| Sbjct 151539718 ATTCAGAAAGAATCCACCCTGCAC 151539741 >seq4 Length=133473341 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || || ||||| ||||| ||||| || || || ||||| || || ||||| ||| | Sbjct 14611010 CCGGAGGAAATCTCATCCATGGTGCTGACCAAGATGAAGGAGACGGCAGAGGCCTATTTG 14611069 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || | ||| || | || || || || || || ||||| ||||| || | || || Sbjct 14611070 GGCTACAAAGTCACCAACGCCGTCATCACCGTGCCAGCTTACTTCAACGACTCCCAGCGA 14611129 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || || ||||| || |||||||||||| || || || |||| || ||||| Sbjct 14611130 CAGGCTACCAAGGATGCCGGCGTTATTGCTGGTTTGAACGTGCTGAGAATCATCAATGAG 14611189 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || || || || | || ||||| || Sbjct 14611190 CCCACGGCGGCCGCCATTGCCTATGGCCT 14611218 Score = 84.2 bits (92), Expect = 9e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || || ||||| ||||| ||||| || || || ||||| || || ||||| ||| | Sbjct 13678156 CCGGAGGAAATCTCATCCATGGTGCTGACCAAGATGAAGGAGACGGCAGAGGCCTATTTG 13678097 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || | ||| || | || || || || || || ||||| ||||| || | || || Sbjct 13678096 GGCTACAAAGTCACCAACGCCGTCATCACCGTGCCAGCTTACTTCAACGACTCCCAGCGA 13678037 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || || ||||| || |||||||||||| || || || |||| || ||||| Sbjct 13678036 CAGGCTACCAAGGATGCCGGCGTTATTGCTGGTTTGAACGTGCTGAGAATCATCAATGAG 13677977 Query 451424 CCTACAGCAGCTGC 451437 || || || || || Sbjct 13677976 CCCACGGCGGCCGC 13677963 >seq7 Length=117177943 Score = 87.8 bits (96), Expect = 7e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| ||||||||||| || || ||||| ||||| | || || || || || || |||| Sbjct 54521678 ATGCTGTAATTACTGTCCCAGCATATTTTAATGACTCCCAGCGACAGGCTACAAAGGATG 54521619 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || ||| |||| | ||||| || ||||| |||||||| || || || ||||| Sbjct 54521618 CTGGTACTATATCTGGGCTGAATGTACTGCGAATCATTAATGAGCCAACTGCTGCTGCCA 54521559 Query 451440 TAGCATATGGACT 451452 | || |||||||| Sbjct 54521558 TTGCTTATGGACT 54521546 Score = 87.8 bits (96), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||| |||||||||||||||| ||||| | |||||||| ||||| | ||| |||| || Sbjct 54523242 AGCAGTTGGAATTGATCTTGGCACCACTTACTCATGTGTGGGTGTCTTCCAGCATGGCAA 54523183 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGA 451000 || ||||| || || |||||||||||| Sbjct 54523182 AGTGGAAATCATTGCCAATGACCAAGGA 54523155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975545708628776