Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 150 4e-31 seq2 149 1e-30 >seq1 Length=194866763 Score = 150 bits (166), Expect = 4e-31 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||| || ||||| ||||| ||||| |||||||| | || || Sbjct 151539531 TCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGT 151539472 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| | || || ||||| |||||||| || Sbjct 151539471 GCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACC 151539412 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||||||||||| || || || ||||||||||| ||| ||| || || Sbjct 151539411 TTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGTGTC---ACTTGGTTCAACCTC 151539355 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | || || || |||| || || || || | |||||| Sbjct 151539354 AAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||| | ||||| ||||||||||| ||||| || | |||||| Sbjct 151539303 TCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGT 151539244 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || || || | || || ||||| || |||||||| Sbjct 151539243 GCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCC 151539184 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 ||| |||||||| |||||| ||| || |||||||| || || |||| || || || Sbjct 151539183 TTCCTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTATC---ACTTGGCTCAACCTC 151539127 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| || |||| || || || || | ||||| Sbjct 151539126 AAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| ||||| |||||||| | ||||| | |||||||| Sbjct 151539746 ACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCC 151539687 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| | | || ||||| || ||||||||||| || ||||| Sbjct 151539686 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGG 151539627 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 |||||| ||| || |||||||| ||||| ||| || |||||||| |||| ||| Sbjct 151539626 ATTTTTGCCTTTACATTCTCAATTGTGTC---ACTGGGCTCAACTTCAAGAGTAATGGTC 151539570 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 151539569 TTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 116 bits (128), Expect = 8e-21 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||| || ||||| || || || || | | |||| |||||||| ||||| Sbjct 151539056 TGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCCAGCTGT 151538997 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | | |||||| |||||||||||||||||||| || || ||||| Sbjct 151538996 TTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGTATTTTA 151538937 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| || || ||||| ||||| |||| || ||||| || || | ||||| || Sbjct 151538936 GCCTTCACATTTTCAATAGTGTC---ACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCA 151538880 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | ||||| Sbjct 151538879 GTGAGCGTTTTCACAAATATCTGCAT 151538854 >seq2 Length=170201513 Score = 149 bits (164), Expect = 1e-30 Identities = 161/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| ||||||||||| ||||||||||| |||||| | | | |||||| Sbjct 31802682 ACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCA 31802623 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || |||||||| || || |||||||||||||| Sbjct 31802622 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGG 31802563 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||||| ||||| || ||||| |||| || || || ||||| | ||| Sbjct 31802562 ATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGGGTGATGGTC 31802506 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| |||||||| || | ||||| Sbjct 31802505 TTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 Score = 138 bits (152), Expect = 3e-27 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| ||||| || ||||| || || | ||| || | |||||||| Sbjct 31611116 ACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATCTTCC 31611057 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || ||||||||||| || |||||||||||||| Sbjct 31611056 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31610997 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||||| ||||| || ||||| |||| || || || ||||| | ||| Sbjct 31610996 ATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGGGTGATGGTC 31610940 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| |||||||| || | |||||| Sbjct 31610939 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31610907 Score = 138 bits (152), Expect = 3e-27 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| ||||| || || ||||| || | ||| || | |||||||| Sbjct 31611344 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 31611285 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || ||||||||||| || |||||||||||||| Sbjct 31611284 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31611225 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||||| ||||| || ||||| |||| || || || ||||| | ||| Sbjct 31611224 ATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGGGTGATGGTC 31611168 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| |||||||| || | |||||| Sbjct 31611167 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135 Score = 138 bits (152), Expect = 3e-27 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| ||||| || ||||| || || | ||| || | |||||||| Sbjct 31611572 ACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCTTCC 31611513 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || ||||||||||| || |||||||||||||| Sbjct 31611512 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31611453 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||||| ||||| || ||||| |||| || || || ||||| | ||| Sbjct 31611452 ATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGGGTGATGGTC 31611396 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| |||||||| || | |||||| Sbjct 31611395 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611363 Score = 138 bits (152), Expect = 3e-27 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| |||||||| || ||||| || | ||| || | |||||||| Sbjct 31611800 ACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 31611741 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || ||||||||||| || |||||||||||||| Sbjct 31611740 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31611681 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||||| ||||| || ||||| |||| || || || | ||| | ||| Sbjct 31611680 ATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAAGGTGATGGTC 31611624 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| |||||||| || | |||||| Sbjct 31611623 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| ||||| || || ||||| || ||| || | |||||||| Sbjct 31802910 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCC 31802851 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || ||||||||||| || |||||||||||||| Sbjct 31802850 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31802791 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||||| ||||| || ||||| |||| || || || || |||| ||| Sbjct 31802790 ATCTTTCCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGAGTAATGGTC 31802734 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| |||||||| || | |||||| Sbjct 31802733 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802701 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| || ||||| || ||||| || || ||| || | |||||||| Sbjct 31803366 ACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAAAGGGTGCGGCCATCTTCC 31803307 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || |||||||| || || |||||||||||||| Sbjct 31803306 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGG 31803247 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| || || |||||||||||||| |||| || || || ||||| | ||| Sbjct 31803246 ATCTTTGATTTAACATTCTCAATGGTGTC---ACTTGGCTCTACCTCCAGGGTGATGGTC 31803190 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| |||||||| || | |||||| Sbjct 31803189 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31803157 Score = 129 bits (142), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| ||||| || ||||| || || | ||| || | |||||||| Sbjct 31610888 ACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCTTCC 31610829 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || |||||||| || || |||||||||||||| Sbjct 31610828 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGG 31610769 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||||| ||||| || ||||| |||| || ||||| | ||||| || Sbjct 31610768 ATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCAACTTCCAAGGTAATGGTT 31610712 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| ||||| || || | |||||| Sbjct 31610711 TTGCCAGTCAGGGTTTTCACAAAGATCTGCATT 31610679 Score = 129 bits (142), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || |||||||| || ||| || | |||||||| Sbjct 31803138 ACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGGCCATCTTCT 31803079 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| | | || ||||||||||| || |||||||||||||| Sbjct 31803078 AGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGG 31803019 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| || || ||||| |||||||| |||| || || || ||||| | ||| Sbjct 31803018 ATCTTTGATTTAACATTCTCTATGGTGTC---ACTTGGCTCTACCTCCAGGGTGATGGTC 31802962 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| |||||||| || | |||||| Sbjct 31802961 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109384623680474