Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 129 7e-25 seq5 102 9e-17 >seq6 Length=135134832 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| ||||| || || || | |||||||| ||||| ||||| | Sbjct 118784199 CCTCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCT 118784140 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| |||||| |||| |||||| |||||||| |||||||| ||||||||||| || || | Sbjct 118784139 TTAGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATG 118784080 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| ||||| Sbjct 118784079 CCACCACTCTCTCTCC 118784064 >seq5 Length=146437384 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||||||| || || | ||||||||||| || | ||| ||| Sbjct 134143403 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTT 134143344 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | |||||| || || |||||||| ||||| ||||| || ||||| || || ||||| || Sbjct 134143343 AGCCAGAAAATTGATGCAAATGAACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATGCC 134143284 Query 19105 ACTAGTCTTTCTCC 19118 || | || ||| || Sbjct 134143283 ACCACTCGTTCACC 134143270 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| || ||||| || || |||||||||||| | || |||||||||||||| ||||| || Sbjct 134156603 CATGACACCCATCTTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTTCCTTC 134156544 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATT 18749 || ||||| |||||||||||||||||||| Sbjct 134156543 CAAGGATATGTTCTCCATAAAATCAAATGGATT 134156511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||||||| || || | ||||||||||| || | ||| || Sbjct 134155215 TCATCTCTGCTGATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTC 134155156 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| ||||||||||| || || || || || ||||| || || ||||| || Sbjct 134155155 AGCCAGAATATGGAAGCAAATGAACCGGAGAAAAAGATCCCTTCAACAGCAGCAAAGGCC 134155096 Query 19105 AC 19106 || Sbjct 134155095 AC 134155094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562060866172080