Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 seq8 84.2 3e-11 seq5 82.4 9e-11 >seq6 Length=135134832 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| |||| ||||| || ||||| | ||| ||||| | || ||||| || Sbjct 118784197 TCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCTTT 118784138 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || || || ||||| |||||||| ||||| || ||||| ||||| || ||||| Sbjct 118784137 AGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATGCC 118784078 Query 37320 AC 37321 || Sbjct 118784077 AC 118784076 >seq8 Length=117616046 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 |||||| | ||||| ||||||||| | ||||| | | ||||| | || || || |||||| Sbjct 56742378 GGTGTTCTGCATACTAAATTTTGGGTTGTTGACAGTGAACATTTTTACATTGGTAGTGCT 56742319 Query 153348 AATATGGATTGGAGATCACTAACTCAAGT 153376 ||||||||||||||||| |||| || || Sbjct 56742318 AATATGGATTGGAGATCTTTAACACAGGT 56742290 >seq5 Length=146437384 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| || ||||| || || ||||| ||||| |||| || || ||||| |||||||||| Sbjct 134156603 CATGACACCCATCTTCTGGTATTCGGCAACTT-TCTTCTCAAAGAAATTAGTCTTTCCTT 134156545 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | | ||||| || |||||||||||||||||||| Sbjct 134156544 CCAAGGATATGTTCTCCATAAAATCAAATGGATT 134156511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592266290184880