Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 111 3e-19 seq106 98.7 2e-15 seq6 95.1 2e-14 >seq1 Length=194866763 Score = 111 bits (122), Expect = 3e-19 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGAC--GCGGTATTGGAC 241471 || ||||| ||| ||||| || | ||| || || | ||| | ||| ||||| || | Sbjct 100632709 CATGACCTTCTGCTTGAGCTGAGACACTTGTTCTCTCAGGA--GACTGGCGGTGGAGGCC 100632766 Query 241472 A-GTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 | |||| | ||| | ||||| ||||||||||| ||||||||||||| |||||||| || Sbjct 100632767 AAGTCC-GAGTTCTGCGACTTCAGCACCTTCACCTTCTCCTCCAGCCTGGCGATGCGCTC 100632825 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590 ||| || | | ||||||||||| ||| || | ||||| | || | ||| | ||||| Sbjct 100632826 CAGCTTTCTCTTGCGGCATTTGGAGGCAGCGATTCGGTTTCTCAGCCGCTTCCTCTCCGC 100632885 Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| || ||||| |||| ||||| || || Sbjct 100632886 TTTGATCCGCTCCTGAGTTTCCAGATCGATGGGGGA 100632921 >seq106 Length=555726 Score = 98.7 bits (108), Expect = 2e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||| ||||||||||| ||||| ||||||||||||||||| || Sbjct 346851 GTGTACTCCACGATCTCTGTGCACAGGTTACTGCACTTAATGGTGCCCAGGTTCTGCTGA 346792 Query 213588 TTTGACTTTGCGTTGGCAGA-ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || ||| ||| | ||| ||||||||| ||||||||||| | || ||||| ||| Sbjct 346791 TTGCTCTT-GCGGTTACAGGCATCCTTGTACAGCATGTAGGGAGTGCCAGTCTCCGTCTG 346733 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACC 213689 ||| | | || | ||| || | | |||||| |||||| Sbjct 346732 CGACTCTATAATGGCGTACCACAGCTGCTGGGCCTTCACCACC 346690 >seq6 Length=135134832 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 ||||| ||| | ||||||||| ||| |||||||||| ||||| | || ||||||||| Sbjct 118784188 CTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCTTTAGCCAGAAA 118784129 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 || || || || || ||||||||||| || || || ||||| ||||| || Sbjct 118784128 ATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATGC 118784079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931453363540480