Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 >seq1 Length=194866763 Score = 91.5 bits (100), Expect = 2e-13 Identities = 531/836 (64%), Gaps = 24/836 (3%) Strand=Plus/Minus Query 160128 TTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACG 160187 ||||| || || | | || ||| || | ||| || || || |||||||| | || Sbjct 119737035 TTCTGCAGCATAAATTCCAGGTCCCCAGCCCCAAATACACAAACGGAACGAACATGATTC 119736976 Query 160188 CCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTC 160247 || ||||| || || | |||||||| ||||| || ||||| |||| ||| || Sbjct 119736975 CCAGCACAAGGGGGATATGGTGCTCCTTTGGCCACATCTCCTTCTAAGTATGCCCATTTT 119736916 Query 160248 ACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGG-GGAACGGC 160306 ||||| ||||| || | ||| || || || |||||| || || || || | Sbjct 119736915 ACAAATCTGGCATAAGCGTTCATATCAGAAACATCATATTTGCT-ATTAGCTGGTACAGA 119736857 Query 160307 ACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGT 160366 ||| || || || || || || || || |||||||| | ||| || || ||||| || Sbjct 119736856 ACCTGGTACTCCAGGAATTCGTTGAAGAGTGGCCCATATAAATTCATCAGGACTGTATGT 119736797 Query 160367 GTCCTTAGACCATTCCATGAACTCTCCGA--TTAACCTGTCCCGCAGAACGTGAGTAACG 160424 ||||||||||||||| | || | || || | | | | || || || | |||| Sbjct 119736796 GTCCTTAGACCATTCTAAAAAACGTTGGATTTTTTCATTTTC--CAAAATGTAACTAACA 119736739 Query 160425 TAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT---GGGTATAGGC 160481 | | || || || || ||||| || || || || || | ||| | | || ||| Sbjct 119736738 AATGCTCGTGTTACAACGAAGTAGGCACTACCAGAAAACACTGGTGTCTCGAGTGGAGGA 119736679 Query 160482 GGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACT--CCTT-TC-ACCAGCGCGTGTCG 160537 || || |||||| | | || || | | | | || || || | | | | | Sbjct 119736678 GGTGT---TTTGTCTTCTTCAGTTTT----CCTAATGGCATTGTCAACAATCTCATAATG 119736626 Query 160538 CTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCAC- 160596 || ||||| ||| || || || ||||| ||| || || || ||||| || Sbjct 119736625 TTTTCGCCACCGAACCTCTTTATGGGGAGGCATCTTTTCAGTTTCCAGGCTGTTTTGACT 119736566 Query 160597 CGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTAC 160656 | | | | ||| | | | || |||||| |||| || || | || || || ||| Sbjct 119736565 CTTTAATCCCTTT-AACATTTCTACCATCTCTCGGTTAGTTTTTATTGGGAAATCCATAC 119736507 Query 160657 CGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAAT 160716 | || | |||||| | ||| |||||||| || | | ||| || || |||| |||| Sbjct 119736506 CACAGAGGTTTATTAAGTATTTCCATTTTGCATTTTTATTGTGAAGATCAGTCATACAAT 119736447 Query 160717 TAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCA 160776 | | ||| |||||||| | ||| || || ||||| || || |||| | || || | Sbjct 119736446 TTAGATCGGCCTGCACCCTAGCCCATGATGCATACACCACATTTTCTAACTGGCTAGCAA 119736387 Query 160777 CAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCT-TATCC 160835 || || || || ||||| || || || ||| | || |||| | | || Sbjct 119736386 TGAACACATTTTCAAAACAAGAAGTAATGGCCTTCACTG-CATTTAGAAAAGATGTAGAA 119736328 Query 160836 GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAAC 160895 | || |||||| || | ||| || |||||||| | ||| |||| | || | | Sbjct 119736327 GATTTCTTGTCCACATGAATGCAGTAGTAATTCTGAGGAGTGTATATGGAGCGCAGAAGC 119736268 Query 160896 CTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 ||||| | ||| || ||| |||||| || ||| || || || || || || ||||| Sbjct 119736267 CTCTCTAGCATGTCAATCCTATGATAGACCACTATTGAATATGCAATGGGGAACTC 119736212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577169977632720