Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq106 87.8 9e-13 >seq106 Length=555726 Score = 87.8 bits (96), Expect = 9e-13 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | |||||| |||||||| ||||| || | ||| || |||||| || || || Sbjct 345963 CATAAAGAGATCTGGTATCCACATGGCATAGAACAGATCCCTGGCTCTCTGCTCCTCCTT 345904 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||||||||| || | ||| ||||| | ||| ||||||| || || | | Sbjct 345903 TCCAGTG-TTCTTTTTTAGGTCCAGGAATTCAAAGACATCGTAGTGCCACGGCTCCAGGT 345845 Query 26052 AGATAGCAAA 26061 | || ||||| Sbjct 345844 AAATGGCAAA 345835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253018961463650