Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 145 1e-29 seq5 84.2 3e-11 >seq1 Length=194866763 Score = 145 bits (160), Expect = 1e-29 Identities = 180/243 (74%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 155810 TTTATGTA-ATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAG 155868 ||||| || | || ||||| |||||| | ||||| | ||||| || || || ||| ||| Sbjct 151538840 TTTATTTACAGAACATGCAGATATTTGTGAAAACGCTCACTGGGAAGACCATCACACTAG 151538899 Query 155869 AAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCA 155928 |||| || ||| | |||| ||| ||||| ||||||||| ||||||||||||| Sbjct 151538900 AAGTTGAGCCAAGTGACACTATTGAAAATGTGAAGGCTAAAATACAGGATAAAGAAGGCA 151538959 Query 155929 TACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTT 155988 | |||||||| |||||||| ||||| | ||| || || ||||| |||||| | |||| | Sbjct 151538960 TTCCTCCAGATCAACAAAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGAACCT 151539019 Query 155989 TATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGG 156046 ||||||| |||| | ||||||| || | || || ||||| || | | || ||||| Sbjct 151539020 TATCAGACTATA--ACATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGTTTGAGAGG 151539077 Query 156047 CGG 156049 || Sbjct 151539078 TGG 151539080 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || ||||||| ||||| || || | || || ||| | Sbjct 151539310 ATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGT 151539369 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| ||||| ||||| |||||||| || ||||| || || Sbjct 151539370 GACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAG 151539429 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||| |||||||| |||||| | | || | || ||||| || Sbjct 151539430 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAAC 151539489 Query 156003 AT 156004 || Sbjct 151539490 AT 151539491 >seq5 Length=146437384 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 |||||| || ||||| ||||||||||| || |||||||||||||| || || | ||| Sbjct 134144601 GTATTCGCCAACTTTCTTCTCGAAGAAGTTAGTCTTTCCTTCCAAAGAAATGTTCTCCAT 134144542 Query 17929 AAAATCAAATGGATTAGTGGTTTT 17952 || |||||||||||||||| ||| Sbjct 134144541 GAAGTCAAATGGATTAGTGGCTTT 134144518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731809589615200