Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1 145 7e-30
seq2 132 4e-26
>seq1
Length=194866763
Score = 145 bits (160), Expect = 7e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| || ||| | || || || || |||||||| || || || || || ||| | |
Sbjct 151539309 GATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAG 151539368
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | |||| |||||| ||| || |||||||||||||| || |||||||| ||
Sbjct 151539369 TGACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCA 151539428
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||||||||||||| || |||||||| ||| | | | || ||||| ||
Sbjct 151539429 GCAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAA 151539488
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
|||||| || ||||| ||||| ||||||||
Sbjct 151539489 CATTCAGAAAGAATCCACACTGCACTTGGT 151539518
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | |||||||| || || || || || || || ||||| || | |
Sbjct 151538854 ATGCAGATATTTGTGAAAACGCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCAAGT 151538913
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || || || || || |||||||| || ||||| ||||||
Sbjct 151538914 GACACTATTGAAAATGTGAAGGCTAAAATACAGGATAAAGAAGGCATTCCTCCAGATCAA 151538973
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | ||||||||||| || ||||||||||| ||| ||| | | ||||| ||||||
Sbjct 151538974 CAAAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGAACCTTATCAGACTATAAC 151539033
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| ||||||||||| || || || ||||| | || ||| | || ||
Sbjct 151539034 ATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGTTTGAGAGGTGG 151539080
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || || || || || || || ||||| || ||||| || |||
Sbjct 151539537 GATGCAGATTTTTGTCAAGACCCTGACTGGGAAGACCATTACTCTTGAAGTTGAGCCCAG 151539596
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | ||||| ||| |||||||| || ||||| || || || || ||
Sbjct 151539597 TGACACAATTGAGAATGTAAAGGCAAAAATCCAAGATAAGGAAGGCATTCCCCCTGACCA 151539656
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||||||||| || || |||||||| ||| | | | || ||||| ||
Sbjct 151539657 GCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTACAA 151539716
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||| || ||||| || || ||| |||| | || ||| | || ||
Sbjct 151539717 CATTCAGAAAGAATCCACCCTGCACCTGGTCCTTCGTTTGAGGGGTGG 151539764
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || || || || || || || ||||| || || || || | |
Sbjct 151539081 GATGCAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGAGCCAAG 151539140
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || | ||||| ||| ||||||||||| ||||| || || || || ||
Sbjct 151539141 TGATACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCA 151539200
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||| ||||| || || |||||||| ||| | | | || || || ||
Sbjct 151539201 GCAGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 151539260
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||||||||| ||||| || | ||||| ||
Sbjct 151539261 CATTCAAAAAGAATCCACCTTGCACTTAGT 151539290
>seq2
Length=170201513
Score = 132 bits (146), Expect = 4e-26
Identities = 155/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || ||||| ||||| | ||||| || | |
Sbjct 31610680 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTTGAGCCAAGT 31610739
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | || ||| ||||||||||||||||||||| || || || || ||
Sbjct 31610740 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31610799
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| || |||||||| ||| | | | | || || |||||
Sbjct 31610800 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTATAAT 31610859
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || || || ||||
Sbjct 31610860 ATCCAGAAAGAATCCACCCTGCATCTTG 31610887
Score = 132 bits (146), Expect = 4e-26
Identities = 155/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || || || ||||| | |
Sbjct 31611136 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31611195
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | || ||| ||||||||||||||||||||| || ||||| || ||
Sbjct 31611196 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611255
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| || |||||||| ||| | | | | || || || |||
Sbjct 31611256 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 31611315
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || || || ||||
Sbjct 31611316 ATCCAGAAAGAATCCACCCTGCATCTTG 31611343
Score = 132 bits (146), Expect = 4e-26
Identities = 155/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || | || ||||| | |
Sbjct 31611592 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGAGCCAAGT 31611651
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | || ||| ||||||||||||||||||||| || ||||| || ||
Sbjct 31611652 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611711
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| || |||||||| ||| | | | | || || || |||
Sbjct 31611712 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 31611771
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| ||||| ||||| || || || ||||
Sbjct 31611772 ATCCAAAAAGAATCCACCCTGCATCTTG 31611799
Score = 131 bits (144), Expect = 2e-25
Identities = 158/210 (75%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || || || ||||| | |
Sbjct 31610908 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31610967
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | || ||| ||||||||||||||||||||| || ||||| || ||
Sbjct 31610968 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611027
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881
|| | |||||||||||||| || |||||||| ||| ||| | || | || || ||||
Sbjct 31611028 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCG-CACAC-TTTCTGACTATA 31611085
Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTG 24910
| || || || ||||| || || || ||||
Sbjct 31611086 ATATCCAGAAAGAATCCACCCTGCATCTTG 31611115
Score = 129 bits (142), Expect = 5e-25
Identities = 154/208 (74%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || || || ||||| | |
Sbjct 31611364 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31611423
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | || ||| ||||||||||||||||||||| || ||||| || ||
Sbjct 31611424 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611483
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| || |||||||| ||| | | | || || |||||
Sbjct 31611484 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTATAAT 31611543
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || || || ||||
Sbjct 31611544 ATCCAGAAAGAATCCACCCTGCATCTTG 31611571
Score = 129 bits (142), Expect = 5e-25
Identities = 154/208 (74%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || ||||| || || ||||| | |
Sbjct 31802702 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGAGCCAAGT 31802761
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | || ||| ||||||||||||||||||||| || ||||| || ||
Sbjct 31802762 GACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31802821
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||| || || |||||||| ||| | | | | | || || |||
Sbjct 31802822 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAAC 31802881
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || || || ||||
Sbjct 31802882 ATCCAGAAAGAATCCACCCTGCATCTTG 31802909
Score = 120 bits (132), Expect = 3e-22
Identities = 152/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || || || ||||| | |
Sbjct 31802474 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31802533
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | || ||| ||||||||||||||||||||| || || || || ||
Sbjct 31802534 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31802593
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| || ||||| || |||| | | | | ||||| ||
Sbjct 31802594 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATTGCCGTAGTCTTGCTGATTACAAT 31802653
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| ||||| || || || || || ||||
Sbjct 31802654 ATACAAAAAGAGTCAACTCTGCATCTTG 31802681
Score = 114 bits (126), Expect = 1e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || || || ||||| | |
Sbjct 31802930 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31802989
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| |||| | || ||| ||||||||||||||||||||| || ||||| || ||
Sbjct 31802990 GACACCATAGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31803049
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| || || || || ||| | | | | | || || ||
Sbjct 31803050 CAGAGGTTGATCTTTGCCGGCAAGCAACTAGAAGATGGCCGCACCCTTTGTGACTACAAT 31803109
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || |||||||| || || || ||||
Sbjct 31803110 ATCCAGAAGGAATCCACCCTGCATCTTG 31803137
Score = 114 bits (126), Expect = 1e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || || || ||||| | |
Sbjct 31803158 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31803217
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| ||||||||||||||||||||| || || || || ||
Sbjct 31803218 GACACCATTGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31803277
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| || |||||||| ||| | | | | | || |||||
Sbjct 31803278 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTATAAT 31803337
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || || || ||||
Sbjct 31803338 ATCCAGAAAGAATCAACTCTGCATCTTG 31803365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449859234982160
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