Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 165 6e-36 seq2 161 8e-35 >seq1 Length=194866763 Score = 165 bits (182), Expect = 6e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || ||||| || || ||||||||||| |||||||| ||||| | Sbjct 151539536 CCACCTCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539477 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || || || ||| | |||||||| ||||| || || ||| Sbjct 151539476 AGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGA 151539417 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| |||||||| ||| ||| |||| | |||||| |||| || Sbjct 151539416 ATACCTTCTTTGTCTTG-AATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAAC 151539358 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| ||||| ||||| | ||| || |||||||| ||||| Sbjct 151539357 CTCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||||||| || |||||||| || |||||||| ||||| |||||||| || | Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGAT 151539021 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||||||| | ||||| ||||| ||||| || ||| Sbjct 151539020 AAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGA 151538961 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || |||| ||| || ||| |||| | ||||||| | || ||| Sbjct 151538960 ATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACT 151538901 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || ||||| | ||||| |||||||||||||| || Sbjct 151538900 TCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATGTT 151538851 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || || || || | |||||||||||||||||||| || || | | Sbjct 151539308 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 151539249 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||||||| ||||| || || ||| Sbjct 151539248 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 151539189 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | |||| || ||| | || | ||| ||| | || || Sbjct 151539188 ATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACC 151539129 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || ||||| | ||| || |||||||||||||| Sbjct 151539128 TCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||||||| || |||| || || ||||||||||| |||||||| ||||| | Sbjct 151539764 CCACCCCTCAAACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539705 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | ||||| || ||||| || || ||| Sbjct 151539704 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGA 151539645 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || ||||| | |||| || ||| | || | |||||| | || ||| Sbjct 151539644 ATGCCTTCCTTATCTTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACT 151539585 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| | ||| || ||||| |||||||| Sbjct 151539584 TCAAGAGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 >seq2 Length=170201513 Score = 161 bits (178), Expect = 8e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || || | ||| || ||||||||||| || ||||| || || Sbjct 31802929 TCCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACA 31802870 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || || || ||||||||| | ||||| || ||||| || || || Sbjct 31802869 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 31802810 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| | ||| ||||||| | |||| |||||| | ||||| Sbjct 31802809 GATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31802750 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || || |||||||| | |||||| ||||| ||||||||| Sbjct 31802749 CTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802701 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || || | ||| || ||||||||||| || || ||||| || | Sbjct 31610907 TCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGA 31610848 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || || || ||||| ||| | ||||| || ||||| || || || Sbjct 31610847 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 31610788 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| | ||| ||||||| | |||| |||||| | || || Sbjct 31610787 GATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAAC 31610728 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | || || ||||||||||| | |||||| ||||| ||||||||| Sbjct 31610727 TTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCATT 31610679 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || || | ||| || ||||||||||| || || ||||| || | Sbjct 31611135 TCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGA 31611076 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || || || ||||| ||| | ||||| || ||||| || || || Sbjct 31611075 AAGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 31611016 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| | ||| ||||||| | |||| |||||| | ||||| Sbjct 31611015 GATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31610956 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || |||||||| | |||||| ||||| ||||||||| Sbjct 31610955 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31610907 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || || | ||| || ||||||||||| || ||||| || || | Sbjct 31611363 TCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 31611304 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || || || ||||| ||| | ||||| || ||||| || || || Sbjct 31611303 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 31611244 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| | ||| ||||||| | |||| |||||| | ||||| Sbjct 31611243 GATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31611184 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || |||||||| | |||||| ||||| ||||||||| Sbjct 31611183 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| || || | ||| || |||||||||||||| ||||| || || | | Sbjct 31611818 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 31611759 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | ||||| || ||||| || || || Sbjct 31611758 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611699 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| ||||||| | |||| |||||| | ||||| Sbjct 31611698 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31611639 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || || || |||||||| | |||||| ||||| ||||||||| Sbjct 31611638 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || || | ||| || ||||||||||| || || ||||| || | Sbjct 31611591 TCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGA 31611532 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||||| ||| || || || ||||| ||| | ||||| || ||||| || || || Sbjct 31611531 AAGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 31611472 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| | ||| ||||||| | |||| |||||| | ||||| Sbjct 31611471 GATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31611412 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || |||||||| | |||||| ||||| ||||||||| Sbjct 31611411 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611363 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||| ||| || || | ||| || || || |||||||| || || ||||| || Sbjct 31802701 TCCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGC 31802642 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | || |||| || || || ||||| ||| | ||||| || ||||| || || || Sbjct 31802641 AAGACTACGGCAATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 31802582 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| | ||| ||||||| | |||| |||||| | ||||| Sbjct 31802581 GATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31802522 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | |||||| ||||| |||||||| Sbjct 31802521 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || || | ||| || |||||||| || || || || || || Sbjct 31803157 TCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACA 31803098 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || ||||| ||||| ||| | ||||| || ||||| || || || Sbjct 31803097 AAGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 31803038 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| | ||| ||| ||| | |||| |||||| | ||||| Sbjct 31803037 GATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTAC 31802978 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || |||||||| | |||||| ||||| ||||||||| Sbjct 31802977 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802929 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| || || | ||| || || |||||||| || || ||||| || | Sbjct 31803384 CCACCTCTCAGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAA 31803325 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | ||||| || ||||| || || || Sbjct 31803324 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31803265 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| ||| ||| | || | |||||| | ||||| Sbjct 31803264 ATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACC 31803205 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || |||||||| | |||||| ||||| ||||||||| Sbjct 31803204 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31803157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385187171671902