Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq2 95.1 1e-14 >seq1 Length=194866763 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||| | ||| || || | ||| |||||||| || ||||||||||| Sbjct 151539536 CCACCTCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539477 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| || || || || ||| |||||| | ||||| |||||||| Sbjct 151539476 AGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGA 151539417 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||||| ||||| | ||| | ||||| | ||||| || Sbjct 151539416 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACC 151539357 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || || || |||| || || || ||||||||||| Sbjct 151539356 TCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||||| | ||| ||||| | || ||||| ||||| ||||| || || | Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTC--TG 151539023 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || | ||| ||||| || ||||| |||||| |||||| | ||| ||||| |||| Sbjct 151539022 ATAAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAG 151538963 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | ||||||||||| || ||||| || | | ||| | ||||| | || || | Sbjct 151538962 GAATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAA 151538903 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| | || | ||||| || || | ||||| || ||||| ||||| Sbjct 151538902 CTTCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCAT 151538854 >seq2 Length=170201513 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || |||||||| || |||||||| || | | |||| ||||| || || || ||| Sbjct 31802898 GTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 31802839 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||||| | ||||| || ||||| || ||||||||||| || ||| ||| Sbjct 31802838 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTCCTTTG 31802779 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || ||||| || | ||| | |||||||| |||| ||| Sbjct 31802778 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTT 31802719 Query 137395 TTTACGAATATTTGCAT 137411 ||||| || || ||||| Sbjct 31802718 TTTACAAAGATCTGCAT 31802702 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| |||||||| || | |||| ||||| || || || || Sbjct 31611788 GTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31611729 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||||| | ||||| || ||||| || ||||||||||| || ||| ||| Sbjct 31611728 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31611669 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || ||||| || | || | |||||||| |||| ||| Sbjct 31611668 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 31611609 Query 137395 TTTACGAATATTTGCAT 137411 ||||| || || ||||| Sbjct 31611608 TTTACAAAGATCTGCAT 31611592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488502339410400