Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq5 118 2e-21 seq1086 86.0 1e-11 >seq5 Length=146437384 Score = 118 bits (130), Expect = 2e-21 Identities = 132/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 58365 TTAGGATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATA 58424 ||||| | ||| ||| | |||||||||||| | || |||||| | ||||| || || | Sbjct 79546842 TTAGG-TGGCCTCAGCTCTCTGGTGGTACTATGTTTCAAAAGGGGTGGAATATTTTGACA 79546784 Query 58425 CAGTGTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATC 58484 |||| |||||||||||||| ||||| || || || |||| ||||| || |||||||| | Sbjct 79546783 CAGTATTTTTCATACTTAGAAAAAAATTCAACCAAATTAGTTTTCTGCATGTATATCACC 79546724 Query 58485 ATTTTACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 | | || ||||| || | | ||| | || || |||||| |||| ||||| || Sbjct 79546723 ACTGCACAATGTTCACACTCTGGTGGATCGGAATCAAATGGGTTGCCGGAGGACA 79546669 >seq1086 Length=14221 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 58415 TACTTAGATACAGTGTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACAC 58474 || || || ||||| |||||||||||||| ||||| || || || |||| ||||| || Sbjct 715 TATTTTGACACAGTATTTTTCATACTTAGAAAAAAATTCAACCAAATTAGTTTTCTGCAT 656 Query 58475 GTATATCATCATTTTACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGA 58534 |||||||| || | || ||||| || | | ||| | || || |||||| |||| ||| Sbjct 655 GTATATCACCACTGCACAATGTTCACACTCTGGTGGATCGGAATCAAATGGGTTGCCGGA 596 Query 58535 GGTCA 58539 || || Sbjct 595 GGACA 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903334161609920