Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 129 6e-25 seq106 109 5e-19 seq1 109 5e-19 >seq2 Length=170201513 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| ||||| || || | ||| ||| | || || |||| Sbjct 31611111 ATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCA-TCTTCCAGCT 31611053 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || ||||||||| |||||||| ||||| ||||| ||||| Sbjct 31611052 GCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCT 31610993 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || |||| | ||| | ||||| | ||||| || || | ||||| ||| ||||| | Sbjct 31610992 TTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAG 31610933 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| || |||||||| Sbjct 31610932 TCAGGGTTTTTACAAAGATCTGCAT 31610908 Score = 125 bits (138), Expect = 7e-24 Identities = 149/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTGC 133521 || |||||||| |||||||||||||| | | | ||| | || || |||||||||| Sbjct 31802670 GTTGACTCTTTTTGTATATTGTAATCAGCAAGACT--ACGGCAATCTTCAAGCTGCTTGC 31802613 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| || ||||| ||||| ||||| ||||||| | Sbjct 31802612 CGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTT 31802553 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| | ||||| || || | ||||| ||| ||||| ||||| | Sbjct 31802552 TGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 31802493 Query 133642 TTTTTACGAAAATCTGCATG 133661 ||||||| || ||||||||| Sbjct 31802492 TTTTTACAAAGATCTGCATG 31802473 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| || ||||| || | ||| | | | || || |||| Sbjct 31611339 ATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCA-TCTTCCAGCT 31611281 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || ||||||||| |||||||| ||||| ||||| ||||| Sbjct 31611280 GCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCT 31611221 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || |||| | ||| | ||||| | ||||| || || | ||||| ||| ||||| | Sbjct 31611220 TTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAG 31611161 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| || |||||||| Sbjct 31611160 TCAGGGTTTTTACAAAGATCTGCAT 31611136 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| ||||| || || | ||| | | | || || |||| Sbjct 31611567 ATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCA-TCTTCCAGCT 31611509 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || ||||||||| |||||||| ||||| ||||| ||||| Sbjct 31611508 GCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCT 31611449 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || |||| | ||| | ||||| | ||||| || || | ||||| ||| ||||| | Sbjct 31611448 TTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAG 31611389 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| || |||||||| Sbjct 31611388 TCAGGGTTTTTACAAAGATCTGCAT 31611364 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| ||||| || || ||||| || | ||| | | | || || |||| Sbjct 31611795 ATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCA-TCTTCCAGCT 31611737 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || ||||||||| |||||||| ||||| ||||| ||||| Sbjct 31611736 GCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCT 31611677 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || |||| | ||| | ||||| | ||||| || || | ||||| ||| ||||| | Sbjct 31611676 TTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAG 31611617 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| || |||||||| Sbjct 31611616 TCAGGGTTTTTACAAAGATCTGCAT 31611592 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| || ||||| || | | ||| | | | || || |||| Sbjct 31802905 ATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCA-TCTTCCAGCT 31802847 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || ||||||||| |||||||| ||||| ||||| ||||| Sbjct 31802846 GCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCT 31802787 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || |||| | ||| | ||||| | ||||| || || | || | ||| ||||| | Sbjct 31802786 TTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAG 31802727 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| || |||||||| Sbjct 31802726 TCAGGGTTTTTACAAAGATCTGCAT 31802702 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| ||||| || || | | ||| | | | || || ||||||||||| Sbjct 31803354 GTTGATTCTTTCTGGATATTATAGTCACAAAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 31803296 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| || ||||| ||||| ||||| ||||||| || Sbjct 31803295 GGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGATTT 31803236 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | ||||| || || | ||||| ||| ||||| ||||| || Sbjct 31803235 AACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 31803176 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||| || |||||||| Sbjct 31803175 TTTTACAAAGATCTGCAT 31803158 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| ||||| || || | ||| | | | || || |||| Sbjct 31610883 ATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCA-TCTTCCAGCT 31610825 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || ||||||||| || ||||| ||||| ||||| ||||| Sbjct 31610824 GCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCT 31610765 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || |||| | ||| | ||||| | ||||| || || | ||| | ||||||||| | Sbjct 31610764 TTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTTTTGCCAG 31610705 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || || |||||||| Sbjct 31610704 TCAGGGTTTTCACAAAGATCTGCAT 31610680 >seq106 Length=555726 Score = 109 bits (120), Expect = 5e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| |||||||| | |||||| || ||||| || || ||||| ||||| |||| Sbjct 346850 TGTACTCCACGATCTCTGTGCACAGGTTACTGCACTTAATGGTGCCCAGGTTCTGCTGAT 346791 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||||| ||| || || ||||||||||||||||| || |||||| ||| ||||| Sbjct 346790 TGCTCTTGCGGTTACAGGCATCCTTGTACAGCATGTAGGGAGTGCCAGTCTCCGTCTGCG 346731 >seq1 Length=194866763 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 151539735 GGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 151539677 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| || || ||||||||||| || ||| ||| || Sbjct 151539676 CTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTTGCCT 151539617 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | || | ||| || || ||||| | Sbjct 151539616 TTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTCCCAGTCAGGG 151539557 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 151539556 TCTTGACAAAAATCTGCAT 151539538 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| ||||| || || ||||| || | ||| ||| | || || || Sbjct 151539287 AAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAG 151539229 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| | | ||||||||| || || |||||||||||||| ||| Sbjct 151539228 CTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGAT 151539169 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| || || | ||||| || || | ||| | ||| || || Sbjct 151539168 TTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTTCCC 151539109 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 151539108 AGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || |||||||| | ||| | | | || || |||||||| || Sbjct 151539506 GTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCA-TCTTCCAGCTGCTTTCC 151539448 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | || | | ||||||||||||||| || ||||| ||||| ||| |||||| | Sbjct 151539447 GGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTC-TTGAATTTTTGCTT 151539389 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | || || || || | ||| | ||||| || ||||| | Sbjct 151539388 TTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTTACCAGTCAGGG 151539329 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 151539328 TCTTCACAAATATTTGCAT 151539310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379576291280