Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 3e-11 >seq1 Length=194866763 Score = 84.2 bits (92), Expect = 3e-11 Identities = 220/333 (66%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 ||||||||| | || || || | || || || | || ||||| || || | |||||| Sbjct 119736543 ACCATCTCTCGGTTAGTTTTTATTGGGAAATCCATACCACAGAGGTTTATTAAGTATTTC 119736484 Query 162703 CACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTC 162762 || || | | || ||||| | ||| || ||||||||||| || | | | Sbjct 119736483 CATTTTGCATTTTTATTGTGAAGATCAGTCATACAATTTAGATCGGCCTGCACCCTAGCC 119736424 Query 162763 CACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAA 162822 || || || ||||| || | || ||| | || | || ||||| || ||||| ||| Sbjct 119736423 CATGATGCATACACCACATTTTCTAACTGGCTAGCAATGAACACATTTTCAAAACAAGAA 119736364 Query 162823 ACTATCCCCATCACGGCCAGT-GAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCA 162881 || || |||| || | || || || | | |||| | || || || | ||| Sbjct 119736363 GTAATGGCCTTCACTGCATTTAGAAAAGATGTAGAA-GATTTCTTGTCCACATGAATGCA 119736305 Query 162882 GTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATG 162941 ||| ||||||||| | ||| |||| | ||| | ||||| | ||| || ||| |||| Sbjct 119736304 GTAGTAATTCTGAGGAGTGTATATGGAGCGCAGAAGCCTCTCTAGCATGTCAATCCTATG 119736245 Query 162942 GTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | ||||| || ||||| || ||||||||||| Sbjct 119736244 ATAGACCACTATTGAATATGCAATGGGGAACTC 119736212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578382674211200