Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 149 4e-31 seq2 131 1e-25 >seq1 Length=194866763 Score = 149 bits (164), Expect = 4e-31 Identities = 179/240 (75%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || |||||||| | ||| | ||||| || || ||| ||||| || ||| Sbjct 151539548 AAAATCTGCATCCCACCTCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATG 151539489 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| ||||||||||| | || |||| || ||||||||||| ||||| | |||| Sbjct 151539488 TTGTAATCAGAGAGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGC 151539429 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | |||||||||||| |||||| || || |||| || | |||||| Sbjct 151539428 TGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTT-TGCTTTTACATTTTCAATGGTGTC 151539370 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||| || |||| || || |||||||| || | || || ||||| || ||||| Sbjct 151539369 ACTTGGTTCAACCTCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | |||||||| |||||| || ||||| ||||| || || || Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGAT 151539021 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||| ||||| || ||||| ||||| | || |||||| | || Sbjct 151539020 AAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGA 151538961 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || ||||| ||| |||| || | ||||| |||| || || Sbjct 151538960 ATGCCTTCTTTATCCTGTATTTTAGCCTTC-ACATTTTCAATAGTGTCACTTGGCTCAAC 151538902 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 151538901 TTCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCAT 151538854 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | |||| || || ||| ||||| || ||||||||||| ||| Sbjct 151539764 CCACCCCTCAAACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539705 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| ||||| | |||||| || | || Sbjct 151539704 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGA 151539645 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||||| || | |||| || | ||||| || | || || Sbjct 151539644 ATGCCTTCCTTATCTTGGATTTT-TGCCTTTACATTCTCAATTGTGTCACTGGGCTCAAC 151539586 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | || || ||||| |||||||| Sbjct 151539585 TTCAAGAGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | || || || | ||| |||||||| |||||||| || || Sbjct 151539308 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 151539249 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||||||||| | |||||| || | || Sbjct 151539248 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 151539189 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| || | |||| || | || || |||| || || Sbjct 151539188 ATGCCTTCCTTGTCTTGGATTTT-TGCCTTTACATTCTCAATAGTATCACTTGGCTCAAC 151539130 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | || || ||||| |||||||| Sbjct 151539129 CTCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 >seq2 Length=170201513 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | || | ||| || ||| |||||||| |||||||| || || Sbjct 31611819 ACCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGA 31611760 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 31611759 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 31611700 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || || || |||| || | ||||| |||| || | Sbjct 31611699 GATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTA 31611641 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | |||||||||||||||||||| Sbjct 31611640 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611592 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | || | ||| || ||| ||||| || |||||||| || || Sbjct 31611362 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAA 31611303 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 31611302 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611243 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || || || |||| || | ||||| |||| || || Sbjct 31611242 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31611184 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | |||||||||||||||||||| Sbjct 31611183 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611136 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | || | ||| || ||| ||||| || || || || || || Sbjct 31611134 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31611075 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 31611074 AGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611015 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || || || |||| || | ||||| |||| || || Sbjct 31611014 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31610956 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | |||||||||||||||||||| Sbjct 31610955 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31610908 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | || | ||| || ||| ||||| || || || || || || Sbjct 31611590 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31611531 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 31611530 AGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611471 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || || || |||| || | ||||| |||| || || Sbjct 31611470 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31611412 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | |||||||||||||||||||| Sbjct 31611411 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611364 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | || | ||| || ||| || || || || ||||| || | Sbjct 31803156 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAA 31803097 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||| || |||||||| ||||| | |||||| ||| | || Sbjct 31803096 AGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31803037 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || || || ||||| || | |||||| |||| || || Sbjct 31803036 ATACCTTCTTTGTCTTGGATCTT-TGATTTAACATTCTCTATGGTGTCACTTGGCTCTAC 31802978 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | |||||||||||||||||||| Sbjct 31802977 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802930 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | || | ||| ||||| ||||| || || || || || | Sbjct 31803384 CCACCTCTCAGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAA 31803325 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 31803324 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31803265 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || || || ||||| || | |||||| |||| || || Sbjct 31803264 ATACCTTCTTTGTCTTGGATCTT-TGATTTAACATTCTCAATGGTGTCACTTGGCTCTAC 31803206 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | |||||||||||||||||||| Sbjct 31803205 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31803158 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | || | ||| || ||| ||||| || || || || || || Sbjct 31610906 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31610847 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 31610846 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31610787 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || || || |||| || | ||||| |||| || || Sbjct 31610786 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCAAC 31610728 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || | ||||| |||||||||||||| Sbjct 31610727 TTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 31610680 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | || | ||| ||||| |||||||||||| |||||||| | Sbjct 31802700 CCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCA 31802641 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || | || || || | || || |||||||| ||||| | |||||| ||| | || Sbjct 31802640 AGACTACGGCAATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31802581 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || || || |||| || | ||||| |||| || || Sbjct 31802580 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31802522 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | |||||||||||||||||||| Sbjct 31802521 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | || | ||| || ||| ||||| || |||||||| || | Sbjct 31802928 CCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAA 31802869 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| ||||| | |||||| ||| | || Sbjct 31802868 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31802809 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || | || |||| || | ||||| |||| || || Sbjct 31802808 ATACCTTCTTTGTCTTGGATCTT-TCCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31802750 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || || | |||||||||||||||||||| Sbjct 31802749 CTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328676670522240