Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq2 89.7 5e-13 >seq1 Length=194866763 Score = 109 bits (120), Expect = 5e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||||||||| | | || || ||||| ||||| ||||| | ||| || Sbjct 151539072 CAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCG 151539013 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | |||| | | |||||||||||||| |||||||| Sbjct 151539012 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTC 151538953 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| ||||| |||| | ||| | ||| || | ||||| ||||| | || Sbjct 151538952 TTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGT 151538893 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||| || ||||| | || ||||||||| Sbjct 151538892 GATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATG 151538853 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | || ||||| ||||||||||| || | || || |||||| Sbjct 151539519 AACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTC 151539460 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || |||| | |||| | | ||| || || ||||| || |||||||| || Sbjct 151539459 CAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCTTG 151539400 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||| ||| | | ||| | || || | || || || || | || | ||||| Sbjct 151539399 AATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTT 151539340 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||| || || | || || ||||| Sbjct 151539339 ACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 >seq2 Length=170201513 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| ||||||||||| | ||| || |||||| ||||| || |||| | Sbjct 31611785 GATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 31611726 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || |||||||| || |||||||| || || ||| ||| | Sbjct 31611725 AAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACA 31611666 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || |||||||| |||||| Sbjct 31611665 TTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTT 31611606 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 31611605 ACAAAGATCTGCAT 31611592 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||||||||| || ||||| || | |||| ||||||| ||||| || |||| Sbjct 31802669 TTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCAAGCTGCTTGCCGG 31802610 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | | ||| || ||||| || || |||||||| || || ||| ||| | Sbjct 31802609 CAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGA 31802550 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | ||||| || || | || | || || |||||||| |||| Sbjct 31802549 CATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTT 31802490 Query 132108 TTATGAAAATCTGCATGA 132125 ||| || |||||||||| Sbjct 31802489 TTACAAAGATCTGCATGA 31802472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || ||||||||||| | ||| || |||||| ||||| || |||| | Sbjct 31611329 GATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 31611270 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || |||||||| || |||||||| || || ||| ||| | Sbjct 31611269 AAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACA 31611210 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || |||||||| |||||| Sbjct 31611209 TTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTT 31611150 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 31611149 ACAAAGATCTGCAT 31611136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || ||||||||||| | | ||| || |||||| ||||| || || | | Sbjct 31802895 GATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA 31802836 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || |||||||| || |||||||| || || ||| ||| | Sbjct 31802835 AAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTCCTTTGACA 31802776 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || |||||||| |||||| Sbjct 31802775 TTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTT 31802716 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 31802715 ACAAAGATCTGCAT 31802702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570556979920