Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1 114 1e-20
seq2 109 5e-19
>seq1
Length=194866763
Score = 114 bits (126), Expect = 1e-20
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || |||||||||||||| | | || || | || ||||||||||| || |||||
Sbjct 151539500 TCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 151539441
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGT 35664
||||| | ||||||||| | ||||| | || ||||| ||| |||||||| | | |
Sbjct 151539440 ATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCT-TGAATTTTTGCTTTTACATT 151539382
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||||| || | ||| ||||| | || || |||||||| |||| || |||||
Sbjct 151539381 TTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCAC 151539322
Query 35725 AAATATCTGCAT 35736
|||||| |||||
Sbjct 151539321 AAATATTTGCAT 151539310
Score = 104 bits (114), Expect = 2e-17
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
|||||||| | || |||||||| ||||| || || | |||||||| | || |||
Sbjct 151539062 ACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCC 151539003
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
||||| || || ||||| ||||||| || || || | ||||| || || || |||
Sbjct 151539002 AGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGT 151538943
Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707
|| || ||||| | || | | ||||| || | || || || | ||||| || ||
Sbjct 151538942 ATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTC 151538883
Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCA--TTCTGT 35741
|| || | ||||||||||||||||||| ||||||
Sbjct 151538882 CCAGTGAGCGTTTTCACAAATATCTGCATGTTCTGT 151538847
Score = 102 bits (112), Expect = 7e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| |||||||||||||| || | | || || | || ||||||||||| || |||||
Sbjct 151539272 TCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAA 151539213
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| | ||||||||| | |||| || |||||||| ||| ||| ||| | | |
Sbjct 151539212 ATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTC 151539153
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || || | || ||||| | || || || || || |||| || ||||||
Sbjct 151539152 TCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACA 151539093
Query 35726 AATATCTGCAT 35736
|||||||||||
Sbjct 151539092 AATATCTGCAT 151539082
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || |||||||||||||| | | || || | || ||||||||||| || |||||
Sbjct 151539728 TCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 151539669
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||||| ||||||||| | |||| || ||||| || ||| ||| ||| | | |
Sbjct 151539668 ATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTTGCCTTTACATTC 151539609
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || || || | || || || || || |||| || || |||
Sbjct 151539608 TCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTCCCAGTCAGGGTCTTGACA 151539549
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 151539548 AAAATCTGCAT 151539538
>seq2
Length=170201513
Score = 109 bits (120), Expect = 5e-19
Identities = 140/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| ||||| |||||||| || | | ||| || | || ||||||||||| || |||||
Sbjct 31611782 TCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 31611723
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||||| ||||||||| | ||| | | || ||||| ||||||| || | | |
Sbjct 31611722 ATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 31611663
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || ||||||| ||||| || || || |||| ||||| |||
Sbjct 31611662 TCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACA 31611603
Query 35726 AATATCTGCATTC 35738
|| ||||||||||
Sbjct 31611602 AAGATCTGCATTC 31611590
Score = 105 bits (116), Expect = 6e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || || |||||||| || | | ||| || | || ||||||||||| || |||||
Sbjct 31611326 TCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 31611267
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||||| ||||||||| | ||| | | || ||||| ||||||| || | | |
Sbjct 31611266 ATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 31611207
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || ||||||| ||||| || || || |||| ||||| |||
Sbjct 31611206 TCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACA 31611147
Query 35726 AATATCTGCATTC 35738
|| ||||||||||
Sbjct 31611146 AAGATCTGCATTC 31611134
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || || |||||||| || | ||| || | || ||||||||||| || |||||
Sbjct 31802892 TCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 31802833
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||||| ||||||||| | ||| | | || ||||| ||||||| || | | |
Sbjct 31802832 ATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTC 31802773
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || ||||||| || || || || || |||| ||||| |||
Sbjct 31802772 TCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACA 31802713
Query 35726 AATATCTGCATTC 35738
|| ||||||||||
Sbjct 31802712 AAGATCTGCATTC 31802700
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || || || || || || | | ||| || | || ||||||||||| || |||||
Sbjct 31610870 TCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 31610811
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||||| ||||||||| | || | | || ||||| ||||||| || | | |
Sbjct 31610810 ATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 31610751
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || || |||| || || ||||| || |||| |||||||||
Sbjct 31610750 TCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACA 31610691
Query 35726 AATATCTGCATTCTG 35740
|| ||||||||||||
Sbjct 31610690 AAGATCTGCATTCTG 31610676
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641
|| ||||||||||| || ||||| ||||||| ||||||||| | ||| | | || |||
Sbjct 31611062 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTG 31611003
Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
|| ||||||| || | | | | | ||||| || | || ||||||| |||||
Sbjct 31611002 TCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATG 31610943
Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
|| || || |||| ||||| ||||| ||||||||||
Sbjct 31610942 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATTC 31610906
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641
|| ||||||||||| || ||||| ||||||| ||||||||| | ||| | | || |||
Sbjct 31611518 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTG 31611459
Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
|| ||||||| || | | | | | ||||| || | || ||||||| |||||
Sbjct 31611458 TCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATG 31611399
Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
|| || || |||| ||||| ||||| ||||||||||
Sbjct 31611398 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATTC 31611362
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641
|| ||||||||||| || ||||| ||||||| ||||||||| | || | | || |||
Sbjct 31803312 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTG 31803253
Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
|| ||||||| || | | | | | ||||| || | || ||||||| |||||
Sbjct 31803252 TCTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATG 31803193
Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
|| || || |||| ||||| ||||| ||||||||||
Sbjct 31803192 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATTC 31803156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450755158575760
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