Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq2 109 5e-19 >seq1 Length=194866763 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 151539500 TCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 151539441 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGT 35664 ||||| | ||||||||| | ||||| | || ||||| ||| |||||||| | | | Sbjct 151539440 ATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCT-TGAATTTTTGCTTTTACATT 151539382 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||| ||||| | || || |||||||| |||| || ||||| Sbjct 151539381 TTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCAC 151539322 Query 35725 AAATATCTGCAT 35736 |||||| ||||| Sbjct 151539321 AAATATTTGCAT 151539310 Score = 104 bits (114), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || |||||||| ||||| || || | |||||||| | || ||| Sbjct 151539062 ACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCC 151539003 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| || || ||||| ||||||| || || || | ||||| || || || ||| Sbjct 151539002 AGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGT 151538943 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 || || ||||| | || | | ||||| || | || || || | ||||| || || Sbjct 151538942 ATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTC 151538883 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCA--TTCTGT 35741 || || | ||||||||||||||||||| |||||| Sbjct 151538882 CCAGTGAGCGTTTTCACAAATATCTGCATGTTCTGT 151538847 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||||||||| || | | || || | || ||||||||||| || ||||| Sbjct 151539272 TCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAA 151539213 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | ||||||||| | |||| || |||||||| ||| ||| ||| | | | Sbjct 151539212 ATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTC 151539153 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || | || ||||| | || || || || || |||| || |||||| Sbjct 151539152 TCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACA 151539093 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 151539092 AATATCTGCAT 151539082 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 151539728 TCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 151539669 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | |||| || ||||| || ||| ||| ||| | | | Sbjct 151539668 ATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTTGCCTTTACATTC 151539609 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | || || || || || |||| || || ||| Sbjct 151539608 TCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTCCCAGTCAGGGTCTTGACA 151539549 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 151539548 AAAATCTGCAT 151539538 >seq2 Length=170201513 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 31611782 TCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 31611723 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | ||| | | || ||||| ||||||| || | | | Sbjct 31611722 ATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 31611663 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||||| ||||| || || || |||| ||||| ||| Sbjct 31611662 TCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACA 31611603 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 31611602 AAGATCTGCATTC 31611590 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 31611326 TCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 31611267 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | ||| | | || ||||| ||||||| || | | | Sbjct 31611266 ATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 31611207 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||||| ||||| || || || |||| ||||| ||| Sbjct 31611206 TCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACA 31611147 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 31611146 AAGATCTGCATTC 31611134 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | ||| || | || ||||||||||| || ||||| Sbjct 31802892 TCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 31802833 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | ||| | | || ||||| ||||||| || | | | Sbjct 31802832 ATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTC 31802773 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||||| || || || || || |||| ||||| ||| Sbjct 31802772 TCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACA 31802713 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 31802712 AAGATCTGCATTC 31802700 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || || || || || | | ||| || | || ||||||||||| || ||||| Sbjct 31610870 TCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 31610811 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | || | | || ||||| ||||||| || | | | Sbjct 31610810 ATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 31610751 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || |||| || || ||||| || |||| ||||||||| Sbjct 31610750 TCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACA 31610691 Query 35726 AATATCTGCATTCTG 35740 || |||||||||||| Sbjct 31610690 AAGATCTGCATTCTG 31610676 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| ||||||| ||||||||| | ||| | | || ||| Sbjct 31611062 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTG 31611003 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || ||||||| || | | | | | ||||| || | || ||||||| ||||| Sbjct 31611002 TCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATG 31610943 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || |||| ||||| ||||| |||||||||| Sbjct 31610942 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATTC 31610906 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| ||||||| ||||||||| | ||| | | || ||| Sbjct 31611518 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTG 31611459 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || ||||||| || | | | | | ||||| || | || ||||||| ||||| Sbjct 31611458 TCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATG 31611399 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || |||| ||||| ||||| |||||||||| Sbjct 31611398 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATTC 31611362 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| ||||||| ||||||||| | || | | || ||| Sbjct 31803312 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTG 31803253 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || ||||||| || | | | | | ||||| || | || ||||||| ||||| Sbjct 31803252 TCTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATG 31803193 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || |||| ||||| ||||| |||||||||| Sbjct 31803192 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATTC 31803156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450755158575760