Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq1 116 4e-21 >seq2 Length=170201513 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || || | || || || || |||||||| || || ||||||||||| | Sbjct 31802930 TTCCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAC 31802871 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | || || ||||| ||||| ||||| ||||| | |||||| || || | Sbjct 31802870 AAAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAG 31802811 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| ||||| || ||| |||||| || | |||||| | || | Sbjct 31802810 GGATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTA 31802751 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||||||||| || || || | ||||| || || || |||||| Sbjct 31802750 CCTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802701 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || || | || || || || |||||||| || || ||||||||||| Sbjct 31611364 TTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 31611305 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | || || ||||| ||||| ||||| ||||| | |||||| || || | Sbjct 31611304 AAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAG 31611245 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| ||||| || ||| |||||| || | |||||| | || | Sbjct 31611244 GGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTA 31611185 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || || || | ||||| || || || |||||| Sbjct 31611184 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || || | || || || || |||||||| || || || || ||||| Sbjct 31610908 TTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAG 31610849 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | || || ||||| ||||| ||||| ||||| | |||||| || || | Sbjct 31610848 AAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 31610789 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| ||||| || ||| |||||| || | |||||| | || | Sbjct 31610788 GGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAA 31610729 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || | ||||||||||| || || | ||||| || || || |||||| || Sbjct 31610728 CTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTCTG 31610676 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | || || || || |||||||| ||||| ||||||||||| | Sbjct 31611818 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 31611759 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| ||||| | |||||| || || || Sbjct 31611758 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611699 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || ||| |||||| || | |||||| | || || Sbjct 31611698 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31611639 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || ||||| || || || | ||||| || || || |||||| Sbjct 31611638 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || || | || || || || ||||||||||| || || |||||||| | Sbjct 31803158 TTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCAC 31803099 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | || || || || ||||| ||||| ||||| | |||||| || || | Sbjct 31803098 AAAGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAG 31803039 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| ||||| || ||| ||| || || | ||||| | || | Sbjct 31803038 GGATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTA 31802979 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || || || | ||||| || || || |||||| Sbjct 31802978 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802929 >seq1 Length=194866763 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || | ||| || |||||||| || ||||||||||| || Sbjct 151539536 CCACCTCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539477 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || ||||| ||||| | |||||| ||||| || Sbjct 151539476 AGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGA 151539417 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||||||| ||| || || | ||||| | ||| || Sbjct 151539416 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACC 151539357 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || |||||||| || | || || || || |||||||| Sbjct 151539356 TCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || | ||| | |||||||| ||||||||||||||||| | Sbjct 151539308 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 151539249 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||| ||||||||||| | |||||| || || || Sbjct 151539248 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 151539189 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| |||||| || || || | || || | || || Sbjct 151539188 ATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACC 151539129 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || || || | || || || || || ||||| Sbjct 151539128 TCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || |||||||| || ||||||||||| || | ||| | || || Sbjct 151539746 ACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCC 151539687 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||||||||| ||||| | |||||| || || || |||||||| || ||||| Sbjct 151539686 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGG 151539627 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 |||||| || || || | |||||| | || || || ||||||||||| || Sbjct 151539626 ATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTC 151539567 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || || ||||| ||||| Sbjct 151539566 CCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || |||||||||||||| ||||| ||||| | ||| | || || |||||| Sbjct 151539056 TGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCCAGCTGT 151538997 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| ||||| ||||| | || ||||| || || ||||||||||| || || ||||| Sbjct 151538996 TTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGTATTTTA 151538937 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||||| | || || || || || ||||| || || || Sbjct 151538936 GCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAGTG 151538877 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | ||||| || || || ||||| || Sbjct 151538876 AGCGTTTTCACAAATATCTGCATGTT 151538851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505355302151440