Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq106 131 2e-25 seq6 123 3e-23 seq5 107 3e-18 seq10 95.1 2e-14 >seq106 Length=555726 Score = 131 bits (144), Expect = 2e-25 Identities = 132/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395 ||||||| ||| || ||||||||||| || || || | |||||| | ||| || ||||| Sbjct 336128 CTAAATATTTTCTTGGTTTCCTTGTGCAAGTTAGAGACGGCTATCCGGGCAGCCAGAATG 336069 Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455 ||||| || || || | ||| || || |||||| | ||||| ||||| || || | | Sbjct 336068 GCATAATCTGGGTGCTTTGTGGTCAGGGTGGCTGCTGTCTCCGCTGCTAATGTGTCCAGT 336009 Query 70456 TCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507 ||||||||||| || || ||||| ||||| ||||| |||||||| | |||| Sbjct 336008 TCTATAGTTGTGACCCCATTATAAAGCCCCTGAATGACTTTCATAGTGATTT 335957 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || |||| ||||| || || |||||| || |||| || || | ||| || | Sbjct 352822 TCCAGCCAAAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCTGCGACATGGATGT 352763 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || || || |||||||| |||||||| |||||||||||| | || | ||| Sbjct 352762 TCAGTGACTGGCTCTGGTCGATGAACGCTCCTCTGTCTGCCGCCATTGTAATCACCGTCT 352703 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCA 68604 | |||| |||||||| | ||||| | | || ||| | |||| Sbjct 352702 TCTGAGATATTTCCCACACCGTCTTGTACAGCTCTTTCAGATCA 352659 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || || || ||||| | ||||| || ||||| ||||| ||||||||||| || | || Sbjct 351711 TGGAACTCGCCAGACAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATGGAC 351652 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| ||||| ||||| || || || ||||| || |||| | ||||| Sbjct 351651 TCATTATTGCCCAGGATTTGTGCAGTGGAAGCCGTGGGCATTGGAGCCAGAAGCAAACTG 351592 Query 68839 TT 68840 || Sbjct 351591 TT 351590 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | ||| ||||| ||||| ||||||||||||||||| | ||||||| Sbjct 338670 GTACCAGCATTGAACAGTGTGGGAGAAGCGTGCGTGAACCATTTTTCAGACAACAGATTG 338611 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||||| ||||| | || || || | ||| || || | | || | ||||| | Sbjct 338610 TAGGTTTCGATAGCGGCGTCAATGTCTGTTTTATGTATGCCAACGGATACCCTCATCAGC 338551 Query 70111 ATATGCTGAGGTCGTTCTACC 70131 || ||||| || || ||| || Sbjct 338550 ATGTGCTGTGGGCGCTCTGCC 338530 >seq6 Length=135134832 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | || || || || |||||||||||||| || || | || | Sbjct 118784199 CCTCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCT 118784140 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || |||||||| |||||||| ||||| || ||||||||||| || |||| Sbjct 118784139 TTAGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATG 118784080 Query 39759 CAACAAGTCTCTCTCC 39774 | || | ||||||||| Sbjct 118784079 CCACCACTCTCTCTCC 118784064 >seq5 Length=146437384 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| ||||| || |||||||||||||| || || || || || Sbjct 134155215 TCATCTCTGCTGATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTC 134155156 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||||| |||||| || || || || ||||| ||||| || || ||||| || Sbjct 134155155 AGCCAGAATATGGAAGCAAATGAACCGGAGAAAAAGATCCCTTCAACAGCAGCAAAGGCC 134155096 Query 39761 ACAA 39764 |||| Sbjct 134155095 ACAA 134155092 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| ||||| || |||||||||||||| || || || || || Sbjct 134143403 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTT 134143344 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| || || | ||||| || ||||| ||||| || ||||| || || |||||||| Sbjct 134143343 AGCCAGAAAATTGATGCAAATGAACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATGCC 134143284 Query 39761 AC 39762 || Sbjct 134143283 AC 134143282 >seq10 Length=39945785 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 163057 TACGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAAAGACTACTTGAACAATGGTTCA 163116 || |||||||| |||||| ||||||||| ||||||| || |||||||| | ||| || Sbjct 19250020 TATGAGCCAGGGAAACGTCATTGGCTTAAAGTAAAGAAGGATTACTTGAATGAAGGTGCA 19249961 Query 163117 ATGGCAGACTCTGCAGATTTAGTAGTACTTGGGGCATATTATGGAAAAGGAATAAAGGGT 163176 ||||||||| | || || || | ||| | || || ||||||||||| ||| ||| ||| Sbjct 19249960 ATGGCAGACACCGCTGACTTGGCAGTTTTGGGAGCTTATTATGGAAAGGGAGCAAATGGT 19249901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686850223852080