Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq5 107 2e-18
seq6 82.4 6e-11
>seq5
Length=146437384
Score = 107 bits (118), Expect = 2e-18
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963
|||||| |||||||| ||| | |||| || || || |||||||| || ||||||||
Sbjct 134142860 CGGTTTAGCCAAGAAGTGCAAGTTACAGAGGCTCGCTGCTTTTATGGCTTCCAAATTGCA 134142919
Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| || ||||||||||| || |||||||| ||||| || || || ||||||||||||
Sbjct 134142920 ATGGAGAATATTCATTCTGAGATGTACAGCCTTCTTATTGACACCTACATCAAAGAT 134142976
Score = 96.9 bits (106), Expect = 3e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|| ||||| ||| || | || || || || |||||||| || |||||||| || || |||
Sbjct 134154526 CAGGAAGTGCAAGTAACCGAGGCTCGCTGCTTTTATGGCTTCCAAATTGCAATGGAGAAT 134154585
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|||||||| || |||||||| ||||| || || || ||||| ||||||
Sbjct 134154586 ATTCATTCTGAGATGTACAGCCTTCTTATCGACACCTACATTAAAGAT 134154633
>seq6
Length=135134832
Score = 82.4 bits (90), Expect = 6e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108
||||| |||| |||||||| | || ||||| ||||| | || || | ||
Sbjct 93046102 ATGGCTCTGCCGCCTTGTCACACACTTTGCCAGTTCTACGTAATCGATAAAGAGTTATCC 93046043
Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168
||||| |||| || | || || |||||||| || || || || || ||||| || |||
Sbjct 93046042 TGTCAGCTGTACCAGCGGTCTGGGGACATGGGCCTGGGAGTGCCCTTCAACATTGCCAGT 93045983
Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
||||| ||||||| ||||||||||| || || ||
Sbjct 93045982 TATGCCTTGCTCACTTATATGATTGCTCATGTCAC 93045948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397422954266110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |