Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq6 82.4 6e-11 >seq5 Length=146437384 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| |||||||| ||| | |||| || || || |||||||| || |||||||| Sbjct 134142860 CGGTTTAGCCAAGAAGTGCAAGTTACAGAGGCTCGCTGCTTTTATGGCTTCCAAATTGCA 134142919 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || ||||||||||| || |||||||| ||||| || || || |||||||||||| Sbjct 134142920 ATGGAGAATATTCATTCTGAGATGTACAGCCTTCTTATTGACACCTACATCAAAGAT 134142976 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| || | || || || || |||||||| || |||||||| || || ||| Sbjct 134154526 CAGGAAGTGCAAGTAACCGAGGCTCGCTGCTTTTATGGCTTCCAAATTGCAATGGAGAAT 134154585 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| || |||||||| ||||| || || || ||||| |||||| Sbjct 134154586 ATTCATTCTGAGATGTACAGCCTTCTTATCGACACCTACATTAAAGAT 134154633 >seq6 Length=135134832 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| |||| |||||||| | || ||||| ||||| | || || | || Sbjct 93046102 ATGGCTCTGCCGCCTTGTCACACACTTTGCCAGTTCTACGTAATCGATAAAGAGTTATCC 93046043 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||| |||| || | || || |||||||| || || || || || ||||| || ||| Sbjct 93046042 TGTCAGCTGTACCAGCGGTCTGGGGACATGGGCCTGGGAGTGCCCTTCAACATTGCCAGT 93045983 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||||| ||||||| ||||||||||| || || || Sbjct 93045982 TATGCCTTGCTCACTTATATGATTGCTCATGTCAC 93045948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397422954266110