Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 seq1 84.2 2e-11 >seq2 Length=170201513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || ||||| ||||| | | |||| | ||||| ||||| || ||| Sbjct 31610876 GTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31610817 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| || || || || | ||| ||||| || |||||| ||| Sbjct 31610816 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31610757 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||| | | |||||||| | || || | |||||| ||||| ||| Sbjct 31610756 ACATTCTCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTTTTGCCAGTCAGGGTT 31610697 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 31610696 TTCACAAAGATCTGCAT 31610680 >seq1 Length=194866763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| || | |||||||| | || || || ||||| || || ||||| | | Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGAT 151539021 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || | ||||| |||||||| || || | || | | |||||||| || || Sbjct 151539020 AAGGTTCGGC-CATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGG 151538962 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| || || |||| |||| | |||||| | | ||||| Sbjct 151538961 AATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAAC 151538902 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||| || || | || || || || ||||||||||| || ||||| Sbjct 151538901 TTCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCAT 151538854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424899069626064