Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 seq28 82.4 8e-11 >seq5 Length=146437384 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| || || | || |||||||| || || || |||| Sbjct 134155217 CTTCATCTCTGCTGATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 134155158 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 ||| ||| || |||| | || ||||| ||| ||||| ||||| ||| ||||||| Sbjct 134155157 TCAGCCAGAATATGGAAGCAAATGAACCGGAGAAAAAGATCCCTTCAACAGCAGCAAAGG 134155098 Query 74890 CGACAAGGCG 74899 | |||| ||| Sbjct 134155097 CCACAATGCG 134155088 >seq28 Length=1539431 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| ||||| |||| || |||||||| ||||||||| |||| | || || || || Sbjct 770711 GTGAAGATGTATCGAGGACTGGCAGCATCTTTGCCACCATGCAAC-CTAGTGCCAAACTG 770769 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | || | ||||||| | | |||||| || ||||||||||| |||||||||| Sbjct 770770 ACCAATTGGTTGCAAGAGGCTGACGTTGTTACTTCCGACAAAGTTTTGTGCCAAGTTGA 770828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547169336155600