Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 >seq6 Length=135134832 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || ||||| ||||| ||||| || ||||| | | || ||||| ||||| ||||| || Sbjct 93045945 CCAGTGACATGAGCAATCATATAAGTGAGCAAGGCATAACTGGCAATGTTGAAGGGCACT 93046004 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 30064 || || ||||||||||| |||| |||||| |||||||| || | |||| ||| | ||| Sbjct 93046005 CCCAGGCCCATGTCCCCAGACCGCTGGTACAGCTGACAGGATAACTCTTTATCGATTACG 93046064 Query 30065 TAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || ||||| || | | ||| || || || |||||||| || Sbjct 93046065 TAGAACTGGCAAAGTGTGTGACAAGGCGGCAGAGCCATAAG 93046105 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30225 TGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30284 |||| |||| || || || || ||||||||||| || || ||||| ||||| || |||| Sbjct 93048232 TGTCTTTGTATTCAGCACCAAAGTGCCTCCACTGAAAGCCATACACTGGTCCAAGATCTC 93048291 Query 30285 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30344 | || || |||| ||| || |||||||||||| || | ||| || || || |||| Sbjct 93048292 CTTCCTCTCTGTTTGAGAATCCTTGCTTGTCCAAAAATTCCCGGGAGCCATTTGCATCCC 93048351 Query 30345 AGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGT 30384 |||||||||| || || |||| || ||||| ||||| || Sbjct 93048352 AGATCTTTACACCTTTTGCAGAAAGTTCTTTTGAGTTGGT 93048391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406276618083624