Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2 109 3e-19 seq1 105 4e-18 >seq2 Length=170201513 Score = 109 bits (120), Expect = 3e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || | ||| || ||| || || || || ||||| || ||| Sbjct 31610906 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31610847 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 31610846 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31610787 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTC--TTCGCTCTCC 34656 | || || |||||| ||||||| | ||| || | |||||||| || |||| Sbjct 31610786 ATACCTTCTTTGTCTTGGATCTTT-GCTTTGACATTCTCTATTGTGTCACTTGGCTCA-- 31610730 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || ||||| || || | ||||||||||| |||||||| Sbjct 31610729 ACTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 31610680 >seq1 Length=194866763 Score = 105 bits (116), Expect = 4e-18 Identities = 168/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||| |||||| |||||||| |||||||| ||||| Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGAT 151539021 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| || ||||| || ||||| || || | ||||| || || || Sbjct 151539020 AAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGA 151538961 Query 34600 ACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAA-AATTGTGTC--TTCGCTCTC 34655 | || || || || ||| || ||| | || || | ||| ||||| || |||| Sbjct 151538960 ATGCCTTCTTTATCCTGT-AT-TTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCA- 151538904 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||||| | || || || || || || | |||||||||||| ||||||||||| Sbjct 151538903 -ACTTCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATGTT 151538851 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || || || | ||| || ||||||||||| || || ||| Sbjct 151539308 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 151539249 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| || || | ||| ||||| || || Sbjct 151539248 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 151539189 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT---AAAATTGTGTCTTCGCTCTCC 34656 | || ||||||||| ||| ||||| || || | || | | | ||| | ||| Sbjct 151539188 ATGCCTTCCTTGTCTTGGAT-TTTTGCCTTTACATTCTCAATAGTATCACTTGG--CTCA 151539132 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| || || || || || | || |||||||| |||||||| Sbjct 151539131 ACCTCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||| | |||| || || ||| || || |||||||| ||||| || Sbjct 151539764 CCACCCCTCAAACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539705 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| || || | ||| ||||| || || Sbjct 151539704 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGA 151539645 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||||| || || | ||||||||| | ||| || Sbjct 151539644 ATGCCTTCCTTATCTTGGAT-TTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAAC 151539586 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || | || || |||||||||||||| Sbjct 151539585 TTCAAGAGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314703432397526