Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-26 seq2 127 2e-24 >seq1 Length=194866763 Score = 132 bits (146), Expect = 4e-26 Identities = 184/257 (72%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 26964 AATAAATTTTT---TAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAG 27020 ||||| ||||| | ||||| | ||||||||||||||| ||||| || || || ||| Sbjct 151538827 AATAATTTTTTCTTTTATTTACAGAACATGCAGATATTTGTGAAAACGCTCACTGGGAAG 151538886 Query 27021 TCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAA 27080 | || || || ||||| || || ||| | ||||| | || || ||||| || Sbjct 151538887 ACCATCACACTAGAAGTTGAGCCAAGTGACACTATTGAAAATGTGAAGGCTAAAATACAG 151538946 Query 27081 GACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAA 27140 || ||||||||||| || || |||||||| | || || | || |||||||| ||||| Sbjct 151538947 GATAAAGAAGGCATTCCTCCAGATCAACAAAGGTTGATCTTTGCTGGCAAACAGCTGGAA 151539006 Query 27141 GACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || | ||| | || || || ||||| |||||||| || || | ||||||||| | Sbjct 151539007 GATGGCCGAACCTTATCAGACTATAACATCCAAAAGGAATCCACTCTGCATTTGGTTCTC 151539066 Query 27201 CGTTTGCGGGGTGGCAT 27217 |||||| | ||||| || Sbjct 151539067 CGTTTGAGAGGTGGGAT 151539083 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || ||||| || ||| | ||||| ||||| || || || Sbjct 151539082 ATGCAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGAGCCAAGT 151539141 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || |||||| |||||||| |||||||| || || || || Sbjct 151539142 GATACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAG 151539201 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| || ||||||| || || |||| || |||||| Sbjct 151539202 CAGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 151539261 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||||| || || ||| | ||| | | ||||| || Sbjct 151539262 ATTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGGGAT 151539311 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | |||||||||||||| || || Sbjct 151539538 ATGCAGATTTTTGTCAAGACCCTGACTGGGAAGACCATTACTCTTGAAGTTGAGCCCAGT 151539597 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || |||||| ||||| || |||||||| || || || || Sbjct 151539598 GACACAATTGAGAATGTAAAGGCAAAAATCCAAGATAAGGAAGGCATTCCCCCTGACCAG 151539657 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| || ||||||| | || | || ||||||||| Sbjct 151539658 CAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTACAAC 151539717 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || || ||| | || |||| | |||||| ||||||| Sbjct 151539718 ATTCAGAAAGAATCCACCCTGCACCTGGTCCTTCGTTTGAGGGGTGG 151539764 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || ||||| || || | || || ||||| || ||||| Sbjct 151539310 ATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGT 151539369 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||||||||||||||||||| || || ||||| || Sbjct 151539370 GACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAG 151539429 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || ||||||| | || | || ||||||||| Sbjct 151539430 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAAC 151539489 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || | || |||||| | ||| | | ||||| || Sbjct 151539490 ATTCAGAAAGAATCCACACTGCACTTGGTTCTTCGTCTCAGAGGTGGGAT 151539539 >seq2 Length=170201513 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| ||||| |||||| | || || || || || || || Sbjct 31611136 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31611195 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| || |||||||||||||| || || || || || Sbjct 31611196 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611255 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||| || ||||||| | ||| |||| || |||||| Sbjct 31611256 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 31611315 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||| | || | ||| || | ||||| || Sbjct 31611316 ATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31611365 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| ||||| |||||| | |||||||| || || || || Sbjct 31802702 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGAGCCAAGT 31802761 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| || |||||||||||||| || || || || || Sbjct 31802762 GACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31802821 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| || ||||||| | ||| ||| || |||||| Sbjct 31802822 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAAC 31802881 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||| | || | ||| || | ||||| || Sbjct 31802882 ATCCAGAAAGAATCCACCCTGCATCTTGTACTTCGTCTGAGAGGTGGAAT 31802931 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| ||||| |||||| | || || | || || || || Sbjct 31611592 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGAGCCAAGT 31611651 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| || |||||||||||||| || || || || || Sbjct 31611652 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611711 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||| || ||||||| | ||| |||| || |||||| Sbjct 31611712 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 31611771 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| || || ||| | ||| | || | ||| || | ||||| Sbjct 31611772 ATCCAAAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31611818 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||||||||| ||||| |||||| | || || || || || || || Sbjct 31802473 CATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31802532 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| |||||| ||| || |||||||||||||| || || || || || Sbjct 31802533 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCA 31802592 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | |||||||| || | ||||| | | || | |||||||| Sbjct 31802593 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATTGCCGTAGTCTTGCTGATTACAA 31802652 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| || | ||| | || | ||| || ||||||| || Sbjct 31802653 TATACAAAAAGAGTCAACTCTGCATCTTGTCCTTCGTCTGAGGGGTGGAAT 31802703 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| ||||| |||||| | || || || || || || || Sbjct 31610908 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31610967 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| || |||||||||||||| || || || || || Sbjct 31610968 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611027 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||| || ||||||| || || |||| || || || Sbjct 31611028 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACACTTTCTGACTATAAT 31611087 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||| | || | ||| || | ||||| || Sbjct 31611088 ATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31611137 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| ||||| |||||| | || || || || || || || Sbjct 31802930 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31802989 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||| || |||||||||||||| || || || || || Sbjct 31802990 GACACCATAGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31803049 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||| ||| | ||||| | ||| ||| || ||||| Sbjct 31803050 CAGAGGTTGATCTTTGCCGGCAAGCAACTAGAAGATGGCCGCACCCTTTGTGACTACAAT 31803109 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | ||| | || | ||| || | ||||| || Sbjct 31803110 ATCCAGAAGGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31803159 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| ||||| | ||||| | ||||| || || Sbjct 31610680 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTTGAGCCAAGT 31610739 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| || |||||||||||||| || || || || || Sbjct 31610740 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31610799 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||| || ||||||| | ||| |||| || || || Sbjct 31610800 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTATAAT 31610859 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||| | || | ||| || | ||||| || Sbjct 31610860 ATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31610909 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| ||||| |||||| | || || || || || || || Sbjct 31611364 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31611423 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| || |||||||||||||| || || || || || Sbjct 31611424 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAG 31611483 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||| || ||||||| | || |||| || || || Sbjct 31611484 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTATAAT 31611543 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||| | || | ||| || | ||||| || Sbjct 31611544 ATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31611593 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| ||||| |||||| | || || || || || || || Sbjct 31803158 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31803217 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||| || |||||||||||||| || || || || || Sbjct 31803218 GACACCATTGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31803277 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||| || ||||||| | ||| ||| || || || Sbjct 31803278 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTATAAT 31803337 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || || || || | ||| | || | ||| || | |||||| Sbjct 31803338 ATCCAGAAAGAATCAACTCTGCATCTTGTCCTTCGTCTGAGAGGTGGC 31803385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434881312333440