Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 161 2e-34 seq1 152 1e-31 seq3 86.0 1e-11 >seq2 Length=170201513 Score = 161 bits (178), Expect = 2e-34 Identities = 166/216 (77%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||| |||||||| || || | |||||| | |||||| Sbjct 31611347 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611288 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| ||||| | ||||| ||||| Sbjct 31611287 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611228 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| ||| || || || || |||||| ||| || ||||| || ||||| Sbjct 31611227 TGGATCTTTGCTTTGACATTCTCTATTGTGTCA---CTTGGCTCTACCTCCAGGGTGATG 31611171 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || |||||||| | ||||||| Sbjct 31611170 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135 Score = 161 bits (178), Expect = 2e-34 Identities = 166/216 (77%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| |||||||||||||| || || | |||||| | |||||| Sbjct 31611803 AGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611744 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| ||||| | ||||| ||||| Sbjct 31611743 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611684 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| ||| || || || || |||||| ||| || ||||| | ||||| Sbjct 31611683 TGGATCTTTGCTTTGACATTCTCTATTGTGTCA---CTTGGCTCTACCTCCAAGGTGATG 31611627 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || |||||||| | ||||||| Sbjct 31611626 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 156 bits (172), Expect = 1e-32 Identities = 165/216 (76%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||| ||||| ||||| || | ||| || | |||||| Sbjct 31611119 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATCT 31611060 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| ||||| | ||||| ||||| Sbjct 31611059 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611000 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| ||| || || || || |||||| ||| || ||||| || ||||| Sbjct 31610999 TGGATCTTTGCTTTGACATTCTCTATTGTGTCA---CTTGGCTCTACCTCCAGGGTGATG 31610943 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || |||||||| | ||||||| Sbjct 31610942 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31610907 Score = 156 bits (172), Expect = 1e-32 Identities = 165/216 (76%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||| ||||| ||||| || | ||| || | |||||| Sbjct 31611575 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCT 31611516 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| ||||| | ||||| ||||| Sbjct 31611515 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611456 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| ||| || || || || |||||| ||| || ||||| || ||||| Sbjct 31611455 TGGATCTTTGCTTTGACATTCTCTATTGTGTCA---CTTGGCTCTACCTCCAGGGTGATG 31611399 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || |||||||| | ||||||| Sbjct 31611398 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611363 Score = 156 bits (172), Expect = 1e-32 Identities = 165/216 (76%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| || ||||| ||||| ||||| || |||||| | |||||| Sbjct 31803369 AGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAAAGGGTGCGGCCATCT 31803310 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| || || | ||||| ||||| Sbjct 31803309 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31803250 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| ||| || || || ||||||||| ||| || ||||| || ||||| Sbjct 31803249 TGGATCTTTGATTTAACATTCTCAATGGTGTCA---CTTGGCTCTACCTCCAGGGTGATG 31803193 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || |||||||| | ||||||| Sbjct 31803192 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31803157 Score = 152 bits (168), Expect = 1e-31 Identities = 164/216 (76%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| ||||| |||||||| || || |||||| | |||||| Sbjct 31802913 AGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCT 31802854 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| ||||| | ||||| ||||| Sbjct 31802853 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31802794 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| ||| || || || || |||||| ||| || ||||| ||||| || Sbjct 31802793 TGGATCTTTCCTTTGACATTCTCTATTGTGTCA---CTTGGCTCTACCTCCAGAGTAATG 31802737 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || |||||||| | ||||||| Sbjct 31802736 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802701 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| ||||||||||| || || ||||| ||||| | | | |||| Sbjct 31802685 AGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCT 31802626 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | | || ||||| || || | ||||| ||||| Sbjct 31802625 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31802566 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| ||| || || || || |||||| ||| || ||||| || ||||| Sbjct 31802565 TGGATCTTTGCTTTGACATTCTCTATTGTGTCA---CTTGGCTCTACCTCCAGGGTGATG 31802509 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || |||||||| | |||||| Sbjct 31802508 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 Score = 138 bits (152), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||| ||||| ||||| || | |||||| | |||||| Sbjct 31610891 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCT 31610832 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| || || | ||||| ||||| Sbjct 31610831 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31610772 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| ||| || || || || |||||| ||| ||||| || | || || Sbjct 31610771 TGGATCTTTGCTTTGACATTCTCTATTGTGTCA---CTTGGCTCAACTTCCAAGGTAATG 31610715 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || || ||||| | ||||||| Sbjct 31610714 GTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCATT 31610679 >seq1 Length=194866763 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| || ||||| ||||| | || || | |||||| Sbjct 151539749 AGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCT 151539690 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| | | || |||||||| |||| |||||||| || Sbjct 151539689 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCT 151539630 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||| || || || || || |||||| | ||||| || ||||| || ||| Sbjct 151539629 TGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTC 151539570 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 151539569 TTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||| || |||||||||||||| || | | ||| | |||||||||||||| Sbjct 151539056 TGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCCAGCTGT 151538997 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | | |||||| || ||||||| ||||| || ||||| || || Sbjct 151538996 TTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGTATTTTA 151538937 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088 ||||| ||||| || |||||| ||| ||||| || || ||||| ||||| || Sbjct 151538936 GCCTTCACATTTTCAATAGTGTCA---CTTGGCTCAACTTCTAGTGTGATGGTCTTCCCA 151538880 Query 211089 GTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 ||||| || || ||||| | |||||| || || Sbjct 151538879 GTGAGCGTTTTCACAAATATCTGCATGTTCTG 151538848 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| ||||| || ||||| ||||| | || || | |||||| Sbjct 151539521 AGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCT 151539462 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || ||||| ||||||| ||||| ||||| Sbjct 151539461 TCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCT 151539402 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| ||| || ||||| ||||||||| ||||||||| || || || || Sbjct 151539401 TGAATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTT 151539342 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 151539341 TTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 132 bits (146), Expect = 1e-25 Identities = 150/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| |||||||| ||||| || || | ||| || | |||||||||||||||||||| Sbjct 151539278 GTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCA 151539219 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | || |||||||| |||| ||||||||||| ||||| ||| || Sbjct 151539218 GCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTTGCCTTT 151539159 Query 211038 ACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || || ||| ||| |||||||| || || || ||||| || || || Sbjct 151539158 ACATTCTCAATAGTATCA---CTTGGCTCAACCTCAAGGGTAATGGTCTTCCCAGTCAGG 151539102 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| Sbjct 151539101 GTCTTCACAAATATCTGCAT 151539082 >seq3 Length=137218701 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||||||||| ||||||||| |||| ||| |||||| | |||||| Sbjct 7885556 GGTAGAGGAGGACAATCTGCCTTGCGTTTTGCCCGACTGAGAATGGAAAAACGACACAAC 7885497 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGAC-AACAAGTGTTT 139940 || | | |||||||| |||| || ||||| || ||| | | | ||||| Sbjct 7885496 TATGTCCGTAAAGTTGCTGAGACAGCGGTACAGCTGTTCATCTCCGGCGATAAAGTG-AA 7885438 Query 139941 TGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTC 139989 ||| | ||| |||||||||| || |||||||| || || || ||||| Sbjct 7885437 TGTAGCAGGTCTTGTTTTGGCTGGATCCGCAGACTTTAAAACTGAGCTC 7885389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159050682146030