Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq1 116 9e-21 seq6822 111 4e-19 >seq2 Length=170201513 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || |||||||||||||||| ||||| || | | || | |||||| Sbjct 31611803 AGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611744 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | | || ||||| || || |||||||| |||||| Sbjct 31611743 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611684 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| || ||| || || ||||| | || || || || ||||| ||| Sbjct 31611683 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTC 31611624 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| |||| ||||||| || | |||||| Sbjct 31611623 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || ||||| || |||||||| | ||||||||| || | | | | | |||| Sbjct 31802685 AGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCT 31802626 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | | || ||||| || || |||||||| |||||| Sbjct 31802625 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31802566 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| || ||| || || ||||| | || || || | ||||| ||| Sbjct 31802565 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31802506 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| ||||||| || | ||||| Sbjct 31802505 TTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 Score = 125 bits (138), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAG--TTCTCCCAT 225559 |||||||| || || |||||||| || |||| |||||| || ||||| | | |||| Sbjct 31803141 AGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCA--CAAAGGGTGCGGCCAT 31803084 Query 225560 CTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGT 225619 ||||||| ||||| || || ||||| | | || ||||| || || |||||||| |||| Sbjct 31803083 CTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGT 31803024 Query 225620 CTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 ||||||||||| || ||| || |||||||| | || || || | ||||| | Sbjct 31803023 CTTGGATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTACCTCCAGGGTGATGG 31802964 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||||| |||| ||||||| || | |||||| Sbjct 31802963 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802929 Score = 125 bits (138), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAG--TTCTCCCAT 225559 |||||||| || ||||| |||||||| |||| ||| || || ||||| | | |||| Sbjct 31803369 AGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCA--CAAAGGGTGCGGCCAT 31803312 Query 225560 CTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGT 225619 |||| |||||||| || || ||||| | | || ||||| || || |||||||| |||| Sbjct 31803311 CTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGT 31803252 Query 225620 CTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 ||||||||||| || ||| || |||||||| | || || || | ||||| | Sbjct 31803251 CTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATGG 31803192 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||||| |||| ||||||| || | |||||| Sbjct 31803191 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31803157 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || ||||||||||| |||| ||| || || | | || | |||||| Sbjct 31611119 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATCT 31611060 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | | || ||||| || || |||||||| |||||| Sbjct 31611059 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611000 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| || ||| || || ||||| | || || || | ||||| ||| Sbjct 31610999 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31610940 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| |||| ||||||| || | |||||| Sbjct 31610939 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31610907 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || ||||||||||| |||| ||||| || | | || | |||||| Sbjct 31611347 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611288 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | | || ||||| || || |||||||| |||||| Sbjct 31611287 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611228 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| || ||| || || ||||| | || || || | ||||| ||| Sbjct 31611227 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31611168 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| |||| ||||||| || | |||||| Sbjct 31611167 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || ||||||||||| |||| ||| || || | | || | |||||| Sbjct 31611575 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCT 31611516 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | | || ||||| || || |||||||| |||||| Sbjct 31611515 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611456 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| || ||| || || ||||| | || || || | ||||| ||| Sbjct 31611455 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTC 31611396 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| |||| ||||||| || | |||||| Sbjct 31611395 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611363 Score = 116 bits (128), Expect = 9e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAG--TTCTCCCAT 225559 || ||||| || || ||||||||||| |||| ||||| || ||||| | | |||| Sbjct 31802913 AGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA--CAAAGGGTGCGGCCAT 31802856 Query 225560 CTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGT 225619 |||| |||||||| ||||| ||||| | | || ||||| || || |||||||| |||| Sbjct 31802855 CTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGT 31802796 Query 225620 CTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 ||||||||||| || ||| || || ||||| | || || || | || || | Sbjct 31802795 CTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGG 31802736 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||||| |||| ||||||| || | |||||| Sbjct 31802735 TCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802701 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || ||||||||||| |||| ||| || || | | || | |||||| Sbjct 31610891 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCT 31610832 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | | || ||||| || || |||||||| |||||| Sbjct 31610831 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31610772 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| || ||| || || ||||| | || || || || || || || Sbjct 31610771 TGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTT 31610712 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| |||| ||||| | || | |||||| Sbjct 31610711 TTGCCAGTCAGGGTTTTCACAAAGATCTGCATT 31610679 >seq1 Length=194866763 Score = 116 bits (128), Expect = 9e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||||||||| || | |||||||| | | || | |||||| Sbjct 151539521 AGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCT 151539462 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | || || |||||||| ||||||||||| |||||| Sbjct 151539461 TCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCT 151539402 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || |||||| || ||| ||| |||||||| | ||| || || | || || || Sbjct 151539401 TGAAT-TTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGT 151539343 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | || | |||||| Sbjct 151539342 TTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||||||||| || | |||||||| | | ||| | |||||| Sbjct 151539749 AGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCT 151539690 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | | || ||||| || ||||| |||||||| ||| Sbjct 151539689 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCT 151539630 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| ||| ||| ||| || || ||||| || || || || | || || ||| Sbjct 151539629 TGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTC 151539570 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 151539569 TTCCCAGTCA 151539560 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||||||||| ||||||| || || || | || |||| |||||||| ||||| Sbjct 151539056 TGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCCAGCTGT 151538997 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | | |||||| || || ||||| ||||| || || || || || Sbjct 151538996 TTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGTATTTTA 151538937 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| ||| || ||||| | || || |||| ||||| ||||| || || Sbjct 151538936 GCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAGTG 151538877 Query 225691 AAAGTTTTTATGAACACTTGCATTTTATG 225719 | ||||| | || | ||||| || || Sbjct 151538876 AGCGTTTTCACAAATATCTGCATGTTCTG 151538848 Score = 100 bits (110), Expect = 7e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||| | ||||| || | | ||| | |||||||| |||||||| ||| Sbjct 151539278 GTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCA 151539219 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | || || ||||| || ||||| ||||||||||||||||| ||| ||| Sbjct 151539218 GCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTTGCCTTT 151539159 Query 225637 ACA 225639 ||| Sbjct 151539158 ACA 151539156 >seq6822 Length=17610 Score = 111 bits (122), Expect = 4e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || || ||| | || || || |||||| ||||||||||||| | || ||||| Sbjct 5552 TTTATAATGTAATTGTAACTGCACACGCCTTTATTATGATTTTCTTCATGGTAATGCCTA 5611 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 ||||||| ||||| || || || ||| || |||| ||||| || || || || || |||| Sbjct 5612 TTATGATCGGCGGGTTTGGCAACTGACTCATTCCATTAATAATCGGGGCCCCCGACATGG 5671 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 | ||||| | | || |||||||| || ||| | ||||| || || || Sbjct 5672 CATTTCCTCGAATAAATAATATAAGCTTCTGACTCCTACCTCCATCATT 5720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192426964574468