Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 >seq6 Length=135134832 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || ||||| ||||| ||||| || ||||| | | || ||||| ||||| |||||||| Sbjct 93045945 CCAGTGACATGAGCAATCATATAAGTGAGCAAGGCATAACTGGCAATGTTGAAGGGCACT 93046004 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836 || || ||||||||||| |||| |||||| ||||| || || | |||| ||| | ||| Sbjct 93046005 CCCAGGCCCATGTCCCCAGACCGCTGGTACAGCTGACAGGATAACTCTTTATCGATTACG 93046064 Query 29837 TAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || ||||| || | | || || || || || ||||| ||| Sbjct 93046065 TAGAACTGGCAAAGTGTGTGACAAGGCGGCAGAGCCATAAGA 93046106 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||| || || ||||| ||||| || ||||| || || |||| ||| Sbjct 93048252 AAGTGCCTCCACTGAAAGCCATACACTGGTCCAAGATCTCCTTCCTCTCTGTTTGAGAAT 93048311 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||||||||| || | ||| || || || |||||||||||||| || || | Sbjct 93048312 CCTTGCTTGTCCAAAAATTCCCGGGAGCCATTTGCATCCCAGATCTTTACACCTTTTGCA 93048371 Query 30137 GAGAGCTCTTTGGAGTTTGT 30156 || || ||||| ||||| || Sbjct 93048372 GAAAGTTCTTTTGAGTTGGT 93048391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406129430322292