Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 >seq6 Length=135134832 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 || ||||| ||||| ||||| || ||||| | | || ||||| ||||| ||||| || Sbjct 93045945 CCAGTGACATGAGCAATCATATAAGTGAGCAAGGCATAACTGGCAATGTTGAAGGGCACT 93046004 Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACG 27330 || || ||||||||||| |||| |||||| |||||||| || | |||| |||| ||||| Sbjct 93046005 CCCAGGCCCATGTCCCCAGACCGCTGGTACAGCTGACAGGATAACTCTTTATCGATTACG 93046064 Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || ||||| || | | ||| || || || |||||||| || Sbjct 93046065 TAGAACTGGCAAAGTGTGTGACAAGGCGGCAGAGCCATAAG 93046105 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 27491 TGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTC 27550 |||| |||| || || || || |||||||| || || || ||||| ||||| || |||| Sbjct 93048232 TGTCTTTGTATTCAGCACCAAAGTGCCTCCACTGAAAGCCATACACTGGTCCAAGATCTC 93048291 Query 27551 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 27610 | || || |||| ||| || |||||||||||| || | ||| || || || |||| Sbjct 93048292 CTTCCTCTCTGTTTGAGAATCCTTGCTTGTCCAAAAATTCCCGGGAGCCATTTGCATCCC 93048351 Query 27611 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGT 27650 |||||||||| || || | || || ||||| ||||| || Sbjct 93048352 AGATCTTTACACCTTTTGCAGAAAGTTCTTTTGAGTTGGT 93048391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369476478016682