Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq106 140 5e-28 seq6 102 1e-16 seq5 95.1 2e-14 seq10 86.0 9e-12 >seq106 Length=555726 Score = 140 bits (154), Expect = 5e-28 Identities = 134/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803 ||||||| ||| || ||||||||||| | ||||| || ||||| | ||||| ||||| Sbjct 336128 CTAAATATTTTCTTGGTTTCCTTGTGCAAGTTAGAGACGGCTATCCGGGCAGCCAGAATG 336069 Query 78804 GCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAAC 78863 |||||||| || || | ||| || ||||||||| | || || ||||| | || | Sbjct 336068 GCATAATCTGGGTGCTTTGTGGTCAGGGTGGCTGCTGTCTCCGCTGCTAATGTGTCCAGT 336009 Query 78864 TCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTT 78915 ||||||||||||||||||||||| || || ||||| |||||||| | ||||| Sbjct 336008 TCTATAGTTGTGACCCCATTATAAAGCCCCTGAATGACTTTCATAGTGATTT 335957 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | ||| ||||| || ||||| |||||||||||||| | |||||| Sbjct 338670 GTACCAGCATTGAACAGTGTGGGAGAAGCGTGCGTGAACCATTTTTCAGACAACAGATTG 338611 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||| ||||| | || ||||| || ||| || || || | ||| | ||||| | Sbjct 338610 TAGGTTTCGATAGCGGCGTCAATGTCTGTTTTATGTATGCCAACGGATACCCTCATCAGC 338551 Query 78519 ATATGCTGAGG 78529 || ||||| || Sbjct 338550 ATGTGCTGTGG 338540 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || || || ||||||| ||||| || ||||| ||||| ||||||||||| || | || Sbjct 351711 TGGAACTCGCCAGACAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATGGAC 351652 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||||| ||||| ||||| || ||||| || |||| | ||||| Sbjct 351651 TCATTATTGCCCAGGATTTGTGCAGTGGAAGCCGTGGGCATTGGAGCCAGAAGCAAACTG 351592 Query 77247 TT 77248 || Sbjct 351591 TT 351590 >seq6 Length=135134832 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | || || || || ||||| || ||||| ||||| | ||| || Sbjct 118784197 TCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCTTT 118784138 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || || || || || |||||||| |||||||| |||||||| || || ||||| Sbjct 118784137 AGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATGCC 118784078 Query 48285 GTAAGTCTCTCTCC 48298 | ||||||||| Sbjct 118784077 ACCACTCTCTCTCC 118784064 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 ||||| || || ||||| ||||| |||| || || |||||||| ||||| ||||| | Sbjct 118778808 ACTTCCTCTGCCGTCCAGAATGAGGCCTGGGCCTTCTTATACATTTTCCAGATATCCGGG 118778749 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTCC 48752 || || ||||||||||| ||||||| | || ||||| ||||| |||||| Sbjct 118778748 TAGTGAATTGGGAAAATGACAAATCGTTGAGGGTTTTTCCTAAGGAACGGTTCC 118778695 >seq5 Length=146437384 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/140 (76%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGAGACATAACTCCCATT 47849 ||||||| || ||| ||||| || || || ||| |||| ||||| || ||||| Sbjct 134156649 TTTAAAATTCGGCATTTAAAGTGAATTGCTTGTCTGTTGCCTTG-GACATGACACCCATC 134156591 Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || || ||||| | || ||||| || |||||||| || |||||||| ||||| || Sbjct 134156590 TTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTTCCTTCCAAGGATATGTTC 134156531 Query 47910 TCCATAAAATCAAATGGATT 47929 |||||||||||||||||||| Sbjct 134156530 TCCATAAAATCAAATGGATT 134156511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 |||||||||| |||||| | ||| || |||| | | ||||| || ||||| || Sbjct 134144664 TTAAAAGTCAGCATCTAGTGTGAAAGTGTTGTCTTTTGGCTTTGACATGACACCCATCTT 134144605 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 || ||||| || || |||||||| || ||||| || |||||||| || || || || Sbjct 134144604 CTGGTATTCGCCAACTTTCTTCTCGAAGAAGTTAGTCTTTCCTTCCAAAGAAATGTTCTC 134144545 Query 47912 CATAAAATCAAATGGATTA 47930 ||| || |||||||||||| Sbjct 134144544 CATGAAGTCAAATGGATTA 134144526 >seq10 Length=39945785 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 171530 TACGAGCCCGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAACGAGGGTTCG 171589 || ||||| || |||||| ||||||||| |||||| || |||||||| || ||| | Sbjct 19250020 TATGAGCCAGGGAAACGTCATTGGCTTAAAGTAAAGAAGGATTACTTGAATGAAGGTGCA 19249961 Query 171590 ATGGCGGATTCTGCAGATCTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAGGGT 171649 ||||| || | || || | | ||| ||||| || ||||||||||| ||| |||| ||| Sbjct 19249960 ATGGCAGACACCGCTGACTTGGCAGTTTTGGGAGCTTATTATGGAAAGGGAGCAAATGGT 19249901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694609562118080